Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3159 and Dshi_3160 are separated by 184 nucleotides Dshi_3160 and Dshi_3161 are separated by 47 nucleotides Dshi_3161 and Dshi_3162 are separated by 27 nucleotides
Dshi_3159: Dshi_3159 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 3,323,968 to 3,325,263
_3159
Dshi_3160: Dshi_3160 - hypothetical protein (RefSeq), at 3,325,448 to 3,325,705
_3160
Dshi_3161: Dshi_3161 - NapC/NirT cytochrome c domain protein (RefSeq), at 3,325,753 to 3,326,466
_3161
Dshi_3162: Dshi_3162 - Nitrate reductase cytochrome c-type subunit (NapB) (RefSeq), at 3,326,494 to 3,326,937
_3162
Position (kb)
3325
3326 Strain fitness (log2 ratio)
-2
-1
0
1 at 3324.528 kb on - strand, within Dshi_3159 at 3324.668 kb on + strand at 3324.676 kb on - strand, within Dshi_3159 at 3324.760 kb on - strand, within Dshi_3159 at 3324.955 kb on - strand, within Dshi_3159 at 3325.017 kb on + strand, within Dshi_3159 at 3325.025 kb on - strand, within Dshi_3159 at 3325.061 kb on + strand, within Dshi_3159 at 3325.247 kb on - strand at 3325.481 kb on + strand, within Dshi_3160 at 3325.534 kb on + strand, within Dshi_3160 at 3325.585 kb on + strand, within Dshi_3160 at 3325.642 kb on - strand, within Dshi_3160 at 3325.671 kb on - strand, within Dshi_3160 at 3325.845 kb on + strand, within Dshi_3161 at 3325.943 kb on + strand, within Dshi_3161 at 3325.943 kb on + strand, within Dshi_3161 at 3325.943 kb on + strand, within Dshi_3161 at 3326.065 kb on - strand, within Dshi_3161 at 3326.065 kb on - strand, within Dshi_3161 at 3326.198 kb on - strand, within Dshi_3161 at 3326.199 kb on - strand, within Dshi_3161 at 3326.425 kb on - strand at 3326.538 kb on + strand at 3326.554 kb on - strand, within Dshi_3162 at 3326.573 kb on + strand, within Dshi_3162 at 3326.578 kb on + strand, within Dshi_3162 at 3326.636 kb on + strand, within Dshi_3162 at 3326.644 kb on - strand, within Dshi_3162 at 3326.664 kb on + strand, within Dshi_3162 at 3326.664 kb on + strand, within Dshi_3162
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 3,324,528 - Dshi_3159 0.43 -1.9 3,324,668 + -0.9 3,324,676 - Dshi_3159 0.55 +0.1 3,324,760 - Dshi_3159 0.61 -1.3 3,324,955 - Dshi_3159 0.76 -2.4 3,325,017 + Dshi_3159 0.81 +0.7 3,325,025 - Dshi_3159 0.82 -2.1 3,325,061 + Dshi_3159 0.84 +1.1 3,325,247 - +0.1 3,325,481 + Dshi_3160 0.13 -1.3 3,325,534 + Dshi_3160 0.33 -1.7 3,325,585 + Dshi_3160 0.53 -0.9 3,325,642 - Dshi_3160 0.75 +0.5 3,325,671 - Dshi_3160 0.86 -0.9 3,325,845 + Dshi_3161 0.13 +1.1 3,325,943 + Dshi_3161 0.27 -0.7 3,325,943 + Dshi_3161 0.27 -0.9 3,325,943 + Dshi_3161 0.27 +0.4 3,326,065 - Dshi_3161 0.44 -1.1 3,326,065 - Dshi_3161 0.44 -2.3 3,326,198 - Dshi_3161 0.62 -1.5 3,326,199 - Dshi_3161 0.62 -0.5 3,326,425 - -1.9 3,326,538 + +1.1 3,326,554 - Dshi_3162 0.14 +0.8 3,326,573 + Dshi_3162 0.18 -0.2 3,326,578 + Dshi_3162 0.19 +1.1 3,326,636 + Dshi_3162 0.32 +0.3 3,326,644 - Dshi_3162 0.34 -0.5 3,326,664 + Dshi_3162 0.38 -1.3 3,326,664 + Dshi_3162 0.38 -2.7
Or see this region's nucleotide sequence