Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3100

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3098 and Dshi_3099 overlap by 4 nucleotidesDshi_3099 and Dshi_3100 are separated by 16 nucleotidesDshi_3100 and Dshi_3101 are separated by 60 nucleotides Dshi_3098: Dshi_3098 - hypothetical protein (RefSeq), at 3,265,922 to 3,266,470 _3098 Dshi_3099: Dshi_3099 - protein of unknown function DUF558 (RefSeq), at 3,266,467 to 3,267,216 _3099 Dshi_3100: Dshi_3100 - 4-hydroxybenzoate polyprenyl transferase (RefSeq), at 3,267,233 to 3,268,201 _3100 Dshi_3101: Dshi_3101 - OmpA/MotB domain protein (RefSeq), at 3,268,262 to 3,270,115 _3101 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3266.332 kb on - strand, within Dshi_3098at 3266.332 kb on - strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.409 kb on - strand, within Dshi_3098at 3266.506 kb on - strandat 3266.572 kb on - strand, within Dshi_3099at 3266.711 kb on + strand, within Dshi_3099at 3266.972 kb on - strand, within Dshi_3099at 3266.998 kb on - strand, within Dshi_3099at 3267.010 kb on - strand, within Dshi_3099at 3267.070 kb on + strand, within Dshi_3099at 3267.095 kb on + strand, within Dshi_3099at 3267.185 kb on - strandat 3268.334 kb on - strandat 3268.753 kb on - strand, within Dshi_3101

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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3,266,332 - Dshi_3098 0.75 +1.9
3,266,332 - Dshi_3098 0.75 +1.1
3,266,401 + Dshi_3098 0.87 +1.0
3,266,401 + Dshi_3098 0.87 -1.0
3,266,401 + Dshi_3098 0.87 +1.0
3,266,409 - Dshi_3098 0.89 +0.2
3,266,506 - -1.3
3,266,572 - Dshi_3099 0.14 +1.1
3,266,711 + Dshi_3099 0.33 -1.3
3,266,972 - Dshi_3099 0.67 +1.0
3,266,998 - Dshi_3099 0.71 +0.7
3,267,010 - Dshi_3099 0.72 -1.8
3,267,070 + Dshi_3099 0.80 -3.3
3,267,095 + Dshi_3099 0.84 -2.3
3,267,185 - +1.0
3,268,334 - +2.4
3,268,753 - Dshi_3101 0.26 +1.0

Or see this region's nucleotide sequence