Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3082

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3081 and Dshi_3082 are separated by 109 nucleotidesDshi_3082 and Dshi_3083 are separated by 119 nucleotidesDshi_3083 and Dshi_3084 are separated by 57 nucleotides Dshi_3081: Dshi_3081 - acriflavin resistance protein (RefSeq), at 3,248,865 to 3,252,272 _3081 Dshi_3082: Dshi_3082 - hypothetical protein (RefSeq), at 3,252,382 to 3,253,191 _3082 Dshi_3083: Dshi_3083 - protein of unknown function DUF179 (RefSeq), at 3,253,311 to 3,253,889 _3083 Dshi_3084: Dshi_3084 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 3,253,947 to 3,254,924 _3084 Position (kb) 3252 3253 3254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3251.469 kb on + strand, within Dshi_3081at 3251.513 kb on - strand, within Dshi_3081at 3251.521 kb on - strand, within Dshi_3081at 3251.805 kb on + strand, within Dshi_3081at 3251.887 kb on - strand, within Dshi_3081at 3251.964 kb on - strandat 3251.978 kb on - strandat 3252.049 kb on - strandat 3252.197 kb on - strandat 3252.224 kb on - strandat 3252.325 kb on - strandat 3252.459 kb on + strandat 3252.555 kb on - strand, within Dshi_3082at 3252.642 kb on + strand, within Dshi_3082at 3252.717 kb on - strand, within Dshi_3082at 3252.724 kb on + strand, within Dshi_3082at 3252.754 kb on - strand, within Dshi_3082at 3252.792 kb on - strand, within Dshi_3082at 3252.872 kb on + strand, within Dshi_3082at 3252.918 kb on + strand, within Dshi_3082at 3253.147 kb on - strandat 3253.181 kb on - strandat 3253.207 kb on + strandat 3253.238 kb on + strandat 3253.283 kb on + strandat 3253.311 kb on + strandat 3253.315 kb on - strandat 3253.334 kb on - strandat 3253.367 kb on - strandat 3253.386 kb on + strand, within Dshi_3083at 3253.417 kb on + strand, within Dshi_3083at 3253.561 kb on - strand, within Dshi_3083at 3253.571 kb on - strand, within Dshi_3083at 3253.709 kb on + strand, within Dshi_3083at 3253.790 kb on + strand, within Dshi_3083

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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3,251,469 + Dshi_3081 0.76 +1.6
3,251,513 - Dshi_3081 0.78 +1.0
3,251,521 - Dshi_3081 0.78 +3.4
3,251,805 + Dshi_3081 0.86 +1.0
3,251,887 - Dshi_3081 0.89 +1.8
3,251,964 - -1.3
3,251,978 - +0.0
3,252,049 - +1.0
3,252,197 - +1.0
3,252,224 - -0.1
3,252,325 - +0.3
3,252,459 + -1.0
3,252,555 - Dshi_3082 0.21 -2.5
3,252,642 + Dshi_3082 0.32 +1.0
3,252,717 - Dshi_3082 0.41 +0.6
3,252,724 + Dshi_3082 0.42 -1.5
3,252,754 - Dshi_3082 0.46 +2.6
3,252,792 - Dshi_3082 0.51 -3.5
3,252,872 + Dshi_3082 0.60 -1.3
3,252,918 + Dshi_3082 0.66 -1.8
3,253,147 - +1.0
3,253,181 - -1.5
3,253,207 + -0.6
3,253,238 + +2.4
3,253,283 + -1.3
3,253,311 + +1.0
3,253,315 - +0.5
3,253,334 - -2.1
3,253,367 - +1.6
3,253,386 + Dshi_3083 0.13 +0.1
3,253,417 + Dshi_3083 0.18 -2.6
3,253,561 - Dshi_3083 0.43 -2.0
3,253,571 - Dshi_3083 0.45 -0.6
3,253,709 + Dshi_3083 0.69 -2.6
3,253,790 + Dshi_3083 0.83 +1.0

Or see this region's nucleotide sequence