Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3076
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,244,482 | - | -1.7 | |||
| 3,244,573 | + | -1.3 | |||
| 3,244,581 | - | -1.3 | |||
| 3,244,593 | + | +0.6 | |||
| 3,244,602 | - | +0.7 | |||
| 3,244,606 | - | -3.4 | |||
| 3,244,724 | - | Dshi_3076 | 0.18 | -1.4 | |
| 3,244,734 | + | Dshi_3076 | 0.20 | -1.8 | |
| 3,244,740 | - | Dshi_3076 | 0.21 | -2.8 | |
| 3,244,742 | - | Dshi_3076 | 0.22 | +1.0 | |
| 3,244,772 | + | Dshi_3076 | 0.28 | -0.6 | |
| 3,244,891 | + | Dshi_3076 | 0.51 | -2.2 | |
| 3,244,910 | - | Dshi_3076 | 0.54 | -0.6 | |
| 3,244,998 | + | Dshi_3076 | 0.71 | +0.0 | |
| 3,245,063 | + | Dshi_3076 | 0.84 | +1.8 | |
| 3,245,081 | + | Dshi_3076 | 0.87 | -3.8 | |
| 3,245,096 | - | -0.6 | |||
| 3,245,199 | + | -0.6 | |||
| 3,245,215 | + | +0.7 | |||
| 3,245,521 | + | Dshi_3077 | 0.30 | +1.0 | |
| 3,245,672 | + | Dshi_3077 | 0.45 | -0.4 | |
| 3,245,792 | + | Dshi_3077 | 0.58 | -1.6 | |
| 3,245,792 | + | Dshi_3077 | 0.58 | +0.0 | |
| 3,245,805 | - | Dshi_3077 | 0.59 | +0.0 | |
| 3,246,122 | - | +0.0 |
Or see this region's nucleotide sequence