Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2981 and Dshi_2982 are separated by 74 nucleotides Dshi_2982 and Dshi_2983 are separated by 63 nucleotides
Dshi_2981: Dshi_2981 - Sulfite oxidase (RefSeq), at 3,147,482 to 3,148,744
_2981
Dshi_2982: Dshi_2982 - hypothetical protein (RefSeq), at 3,148,819 to 3,149,169
_2982
Dshi_2983: Dshi_2983 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 3,149,233 to 3,150,231
_2983
Position (kb)
3148
3149
3150 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3147.828 kb on - strand, within Dshi_2981 at 3147.899 kb on + strand, within Dshi_2981 at 3147.907 kb on - strand, within Dshi_2981 at 3147.914 kb on - strand, within Dshi_2981 at 3148.054 kb on + strand, within Dshi_2981 at 3148.063 kb on + strand, within Dshi_2981 at 3148.184 kb on - strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.335 kb on - strand, within Dshi_2981 at 3148.396 kb on - strand, within Dshi_2981 at 3148.397 kb on + strand, within Dshi_2981 at 3148.448 kb on - strand, within Dshi_2981 at 3148.473 kb on + strand, within Dshi_2981 at 3148.581 kb on + strand, within Dshi_2981 at 3148.608 kb on - strand, within Dshi_2981 at 3148.713 kb on - strand at 3148.722 kb on + strand at 3148.751 kb on - strand at 3148.751 kb on - strand at 3148.772 kb on - strand at 3148.782 kb on - strand at 3148.882 kb on + strand, within Dshi_2982 at 3148.882 kb on + strand, within Dshi_2982 at 3149.019 kb on + strand, within Dshi_2982 at 3149.147 kb on + strand at 3149.158 kb on + strand at 3149.171 kb on - strand at 3149.218 kb on + strand at 3149.226 kb on - strand at 3149.310 kb on - strand at 3149.361 kb on - strand, within Dshi_2983 at 3149.427 kb on + strand, within Dshi_2983 at 3149.466 kb on + strand, within Dshi_2983 at 3149.535 kb on - strand, within Dshi_2983 at 3149.554 kb on + strand, within Dshi_2983 at 3149.584 kb on + strand, within Dshi_2983 at 3149.652 kb on - strand, within Dshi_2983 at 3149.659 kb on + strand, within Dshi_2983 at 3149.798 kb on - strand, within Dshi_2983 at 3149.928 kb on - strand, within Dshi_2983 at 3149.934 kb on + strand, within Dshi_2983 at 3149.934 kb on + strand, within Dshi_2983 at 3149.942 kb on - strand, within Dshi_2983 at 3150.010 kb on - strand, within Dshi_2983 at 3150.079 kb on - strand, within Dshi_2983 at 3150.118 kb on - strand, within Dshi_2983
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 3,147,828 - Dshi_2981 0.27 -1.0 3,147,899 + Dshi_2981 0.33 +1.0 3,147,907 - Dshi_2981 0.34 -1.3 3,147,914 - Dshi_2981 0.34 -2.6 3,148,054 + Dshi_2981 0.45 -0.0 3,148,063 + Dshi_2981 0.46 +2.9 3,148,184 - Dshi_2981 0.56 -1.3 3,148,327 + Dshi_2981 0.67 -0.0 3,148,327 + Dshi_2981 0.67 +1.0 3,148,327 + Dshi_2981 0.67 -0.7 3,148,327 + Dshi_2981 0.67 -1.1 3,148,335 - Dshi_2981 0.68 +0.7 3,148,396 - Dshi_2981 0.72 +3.4 3,148,397 + Dshi_2981 0.72 -0.7 3,148,448 - Dshi_2981 0.76 +0.7 3,148,473 + Dshi_2981 0.78 -1.3 3,148,581 + Dshi_2981 0.87 +2.6 3,148,608 - Dshi_2981 0.89 -2.3 3,148,713 - -0.0 3,148,722 + +0.2 3,148,751 - +2.4 3,148,751 - +1.3 3,148,772 - -1.8 3,148,782 - +1.0 3,148,882 + Dshi_2982 0.18 +2.0 3,148,882 + Dshi_2982 0.18 +1.0 3,149,019 + Dshi_2982 0.57 -0.5 3,149,147 + -0.0 3,149,158 + +1.0 3,149,171 - -2.8 3,149,218 + -0.0 3,149,226 - +0.4 3,149,310 - +1.0 3,149,361 - Dshi_2983 0.13 +0.4 3,149,427 + Dshi_2983 0.19 -1.6 3,149,466 + Dshi_2983 0.23 -0.1 3,149,535 - Dshi_2983 0.30 -0.8 3,149,554 + Dshi_2983 0.32 +1.2 3,149,584 + Dshi_2983 0.35 +1.7 3,149,652 - Dshi_2983 0.42 +1.8 3,149,659 + Dshi_2983 0.43 -2.0 3,149,798 - Dshi_2983 0.57 +1.0 3,149,928 - Dshi_2983 0.70 -1.8 3,149,934 + Dshi_2983 0.70 -0.4 3,149,934 + Dshi_2983 0.70 -0.6 3,149,942 - Dshi_2983 0.71 +3.2 3,150,010 - Dshi_2983 0.78 +3.1 3,150,079 - Dshi_2983 0.85 +2.8 3,150,118 - Dshi_2983 0.89 +0.8
Or see this region's nucleotide sequence