Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2842
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,998,621 | + | Dshi_2841 | 0.13 | +1.2 | |
2,998,792 | - | Dshi_2841 | 0.53 | +1.0 | |
2,998,821 | - | Dshi_2841 | 0.60 | +1.5 | |
2,998,874 | + | Dshi_2841 | 0.73 | -1.0 | |
2,998,874 | + | Dshi_2841 | 0.73 | +0.5 | |
2,998,898 | - | Dshi_2841 | 0.79 | +3.5 | |
2,999,083 | - | +1.3 | |||
2,999,125 | + | -0.7 | |||
2,999,242 | - | +1.0 | |||
2,999,320 | - | Dshi_2842 | 0.15 | -0.9 | |
2,999,493 | + | Dshi_2842 | 0.33 | +1.2 | |
2,999,752 | - | Dshi_2842 | 0.59 | -2.7 | |
3,000,089 | + | -3.6 | |||
3,000,117 | + | -1.6 | |||
3,000,209 | + | -3.0 | |||
3,000,368 | + | Dshi_2843 | 0.11 | -2.8 | |
3,000,390 | - | Dshi_2843 | 0.13 | -2.8 | |
3,000,560 | + | Dshi_2843 | 0.23 | +2.5 | |
3,000,579 | - | Dshi_2843 | 0.24 | -0.3 | |
3,000,655 | + | Dshi_2843 | 0.29 | +1.9 | |
3,000,871 | + | Dshi_2843 | 0.42 | -0.0 | |
3,000,935 | - | Dshi_2843 | 0.46 | +1.3 | |
3,000,965 | + | Dshi_2843 | 0.48 | -0.6 | |
3,001,060 | + | Dshi_2843 | 0.53 | -0.8 | |
3,001,060 | + | Dshi_2843 | 0.53 | +1.5 | |
3,001,060 | + | Dshi_2843 | 0.53 | +1.0 | |
3,001,089 | - | Dshi_2843 | 0.55 | +4.0 | |
3,001,097 | + | Dshi_2843 | 0.56 | +1.7 |
Or see this region's nucleotide sequence