Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2829
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,984,312 | - | Dshi_2828 | 0.36 | +2.5 | |
2,984,477 | + | Dshi_2828 | 0.47 | -0.0 | |
2,984,582 | + | Dshi_2828 | 0.54 | +1.0 | |
2,984,710 | - | Dshi_2828 | 0.62 | +1.1 | |
2,984,714 | - | Dshi_2828 | 0.62 | +1.1 | |
2,984,758 | - | Dshi_2828 | 0.65 | -0.0 | |
2,984,893 | + | Dshi_2828 | 0.74 | +2.2 | |
2,984,997 | - | Dshi_2828 | 0.81 | +1.0 | |
2,985,063 | + | Dshi_2828 | 0.85 | +0.7 | |
2,985,086 | - | Dshi_2828 | 0.87 | +1.0 | |
2,985,148 | - | +3.3 | |||
2,985,174 | + | -0.1 | |||
2,985,200 | + | +2.5 | |||
2,985,209 | + | -0.2 | |||
2,985,315 | + | -1.4 | |||
2,986,144 | - | -1.8 | |||
2,986,208 | - | -2.0 | |||
2,986,380 | - | Dshi_2830 | 0.19 | -1.3 | |
2,986,478 | + | Dshi_2830 | 0.43 | -2.0 | |
2,986,653 | + | Dshi_2830 | 0.86 | -0.8 | |
2,986,680 | + | +2.5 | |||
2,986,730 | - | -0.3 | |||
2,986,739 | - | -1.0 | |||
2,986,781 | - | +1.2 | |||
2,986,818 | + | Dshi_2831 | 0.10 | -0.0 | |
2,986,826 | - | Dshi_2831 | 0.11 | +0.7 | |
2,986,858 | + | Dshi_2831 | 0.15 | -0.8 | |
2,986,977 | - | Dshi_2831 | 0.29 | +3.0 | |
2,987,211 | - | Dshi_2831 | 0.56 | +2.6 | |
2,987,211 | - | Dshi_2831 | 0.56 | +1.0 |
Or see this region's nucleotide sequence