Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2810 and Dshi_2811 overlap by 4 nucleotides Dshi_2811 and Dshi_2812 are separated by 21 nucleotides Dshi_2812 and Dshi_2813 are separated by 20 nucleotides
Dshi_2810: Dshi_2810 - regulatory protein SoxS (RefSeq), at 2,967,368 to 2,967,775
_2810
Dshi_2811: Dshi_2811 - protein of unknown function DUF336 (RefSeq), at 2,967,772 to 2,968,284
_2811
Dshi_2812: Dshi_2812 - transcriptional regulator, ArsR family (RefSeq), at 2,968,306 to 2,968,641
_2812
Dshi_2813: Dshi_2813 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 2,968,662 to 2,969,750
_2813
Position (kb)
2968
2969 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2967.399 kb on - strand at 2967.410 kb on - strand, within Dshi_2810 at 2967.415 kb on - strand, within Dshi_2810 at 2967.444 kb on + strand, within Dshi_2810 at 2967.489 kb on - strand, within Dshi_2810 at 2967.491 kb on + strand, within Dshi_2810 at 2967.523 kb on - strand, within Dshi_2810 at 2967.528 kb on - strand, within Dshi_2810 at 2967.585 kb on + strand, within Dshi_2810 at 2967.666 kb on - strand, within Dshi_2810 at 2967.666 kb on - strand, within Dshi_2810 at 2967.750 kb on + strand at 2967.750 kb on + strand at 2967.881 kb on - strand, within Dshi_2811 at 2967.931 kb on + strand, within Dshi_2811 at 2968.007 kb on - strand, within Dshi_2811 at 2968.015 kb on + strand, within Dshi_2811 at 2968.062 kb on - strand, within Dshi_2811 at 2968.224 kb on - strand, within Dshi_2811 at 2968.253 kb on - strand at 2968.310 kb on - strand at 2968.332 kb on + strand at 2968.340 kb on + strand, within Dshi_2812 at 2968.635 kb on + strand at 2968.732 kb on - strand at 2968.754 kb on - strand at 2968.754 kb on - strand at 2968.843 kb on + strand, within Dshi_2813 at 2968.846 kb on - strand, within Dshi_2813 at 2968.848 kb on + strand, within Dshi_2813 at 2968.914 kb on - strand, within Dshi_2813 at 2969.021 kb on - strand, within Dshi_2813 at 2969.030 kb on - strand, within Dshi_2813 at 2969.102 kb on + strand, within Dshi_2813 at 2969.177 kb on + strand, within Dshi_2813 at 2969.363 kb on + strand at 2969.424 kb on - strand, within Dshi_2813 at 2969.439 kb on + strand, within Dshi_2813 at 2969.439 kb on + strand, within Dshi_2813 at 2969.487 kb on + strand, within Dshi_2813 at 2969.487 kb on + strand, within Dshi_2813 at 2969.487 kb on + strand, within Dshi_2813 at 2969.490 kb on - strand, within Dshi_2813 at 2969.495 kb on - strand, within Dshi_2813 at 2969.495 kb on - strand, within Dshi_2813 at 2969.513 kb on + strand, within Dshi_2813 at 2969.521 kb on - strand, within Dshi_2813 at 2969.521 kb on - strand, within Dshi_2813 at 2969.573 kb on + strand, within Dshi_2813 at 2969.603 kb on + strand, within Dshi_2813
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,967,399 - -1.5 2,967,410 - Dshi_2810 0.10 -1.4 2,967,415 - Dshi_2810 0.12 -1.5 2,967,444 + Dshi_2810 0.19 -1.1 2,967,489 - Dshi_2810 0.30 +0.2 2,967,491 + Dshi_2810 0.30 +0.3 2,967,523 - Dshi_2810 0.38 -2.2 2,967,528 - Dshi_2810 0.39 -1.4 2,967,585 + Dshi_2810 0.53 +3.3 2,967,666 - Dshi_2810 0.73 +0.6 2,967,666 - Dshi_2810 0.73 -0.5 2,967,750 + -0.2 2,967,750 + +0.6 2,967,881 - Dshi_2811 0.21 -1.1 2,967,931 + Dshi_2811 0.31 +0.9 2,968,007 - Dshi_2811 0.46 +0.4 2,968,015 + Dshi_2811 0.47 +2.3 2,968,062 - Dshi_2811 0.57 +0.7 2,968,224 - Dshi_2811 0.88 +0.9 2,968,253 - -1.6 2,968,310 - -0.1 2,968,332 + -0.1 2,968,340 + Dshi_2812 0.10 +1.5 2,968,635 + -0.6 2,968,732 - -1.3 2,968,754 - -2.2 2,968,754 - +1.3 2,968,843 + Dshi_2813 0.17 +1.7 2,968,846 - Dshi_2813 0.17 +0.7 2,968,848 + Dshi_2813 0.17 -0.6 2,968,914 - Dshi_2813 0.23 +0.5 2,969,021 - Dshi_2813 0.33 -1.1 2,969,030 - Dshi_2813 0.34 +0.2 2,969,102 + Dshi_2813 0.40 +1.9 2,969,177 + Dshi_2813 0.47 +0.9 2,969,363 + +0.9 2,969,424 - Dshi_2813 0.70 +0.9 2,969,439 + Dshi_2813 0.71 +0.9 2,969,439 + Dshi_2813 0.71 +0.6 2,969,487 + Dshi_2813 0.76 +0.9 2,969,487 + Dshi_2813 0.76 +0.9 2,969,487 + Dshi_2813 0.76 +0.7 2,969,490 - Dshi_2813 0.76 +0.9 2,969,495 - Dshi_2813 0.76 -1.9 2,969,495 - Dshi_2813 0.76 +3.5 2,969,513 + Dshi_2813 0.78 -0.1 2,969,521 - Dshi_2813 0.79 -2.2 2,969,521 - Dshi_2813 0.79 +0.9 2,969,573 + Dshi_2813 0.84 +1.6 2,969,603 + Dshi_2813 0.86 +1.2
Or see this region's nucleotide sequence