Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2804 and Dshi_2805 are separated by 49 nucleotides Dshi_2805 and Dshi_2806 are separated by 18 nucleotides Dshi_2806 and Dshi_2807 are separated by 35 nucleotides Dshi_2807 and Dshi_2808 are separated by 116 nucleotides Dshi_2808 and Dshi_2809 are separated by 27 nucleotides
Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509
_2804
Dshi_2805: Dshi_2805 - Sulphur oxidation protein SoxZ (RefSeq), at 2,964,559 to 2,964,888
_2805
Dshi_2806: Dshi_2806 - sulfur oxidation protein SoxY (RefSeq), at 2,964,907 to 2,965,323
_2806
Dshi_2807: Dshi_2807 - monoheme cytochrome c SoxX (RefSeq), at 2,965,359 to 2,965,841
_2807
Dshi_2808: Dshi_2808 - thioredoxin SoxW (RefSeq), at 2,965,958 to 2,966,524
_2808
Dshi_2809: Dshi_2809 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 2,966,552 to 2,967,286
_2809
Position (kb)
2965
2966 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2964.366 kb on - strand, within Dshi_2804 at 2964.429 kb on + strand at 2964.437 kb on - strand at 2964.458 kb on - strand at 2964.487 kb on + strand at 2964.557 kb on + strand at 2964.702 kb on - strand, within Dshi_2805 at 2964.769 kb on - strand, within Dshi_2805 at 2964.775 kb on + strand, within Dshi_2805 at 2964.775 kb on + strand, within Dshi_2805 at 2964.900 kb on + strand at 2964.941 kb on + strand at 2965.077 kb on + strand, within Dshi_2806 at 2965.088 kb on + strand, within Dshi_2806 at 2965.090 kb on - strand, within Dshi_2806 at 2965.095 kb on - strand, within Dshi_2806 at 2965.187 kb on - strand, within Dshi_2806 at 2965.258 kb on + strand, within Dshi_2806 at 2965.430 kb on + strand, within Dshi_2807 at 2965.476 kb on - strand, within Dshi_2807 at 2965.564 kb on + strand, within Dshi_2807 at 2965.572 kb on - strand, within Dshi_2807 at 2965.619 kb on - strand, within Dshi_2807 at 2965.664 kb on + strand, within Dshi_2807 at 2965.674 kb on + strand, within Dshi_2807 at 2965.754 kb on - strand, within Dshi_2807 at 2965.766 kb on - strand, within Dshi_2807 at 2965.845 kb on - strand at 2965.895 kb on - strand at 2966.008 kb on + strand at 2966.019 kb on + strand, within Dshi_2808 at 2966.027 kb on - strand, within Dshi_2808 at 2966.118 kb on + strand, within Dshi_2808 at 2966.143 kb on + strand, within Dshi_2808 at 2966.144 kb on + strand, within Dshi_2808 at 2966.144 kb on + strand, within Dshi_2808 at 2966.154 kb on + strand, within Dshi_2808 at 2966.200 kb on + strand, within Dshi_2808 at 2966.208 kb on - strand, within Dshi_2808 at 2966.433 kb on + strand, within Dshi_2808 at 2966.441 kb on - strand, within Dshi_2808 at 2966.441 kb on - strand, within Dshi_2808 at 2966.550 kb on + strand at 2966.798 kb on - strand, within Dshi_2809
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,964,366 - Dshi_2804 0.83 +0.9 2,964,429 + -2.0 2,964,437 - -2.4 2,964,458 - +1.9 2,964,487 + -1.2 2,964,557 + -2.6 2,964,702 - Dshi_2805 0.43 -0.4 2,964,769 - Dshi_2805 0.64 -1.1 2,964,775 + Dshi_2805 0.65 -3.5 2,964,775 + Dshi_2805 0.65 -1.2 2,964,900 + +1.4 2,964,941 + +1.9 2,965,077 + Dshi_2806 0.41 -1.1 2,965,088 + Dshi_2806 0.43 -0.8 2,965,090 - Dshi_2806 0.44 -0.4 2,965,095 - Dshi_2806 0.45 -1.6 2,965,187 - Dshi_2806 0.67 -2.5 2,965,258 + Dshi_2806 0.84 -0.7 2,965,430 + Dshi_2807 0.15 -0.5 2,965,476 - Dshi_2807 0.24 +0.5 2,965,564 + Dshi_2807 0.42 -2.1 2,965,572 - Dshi_2807 0.44 -1.1 2,965,619 - Dshi_2807 0.54 -1.2 2,965,664 + Dshi_2807 0.63 -0.4 2,965,674 + Dshi_2807 0.65 -2.1 2,965,754 - Dshi_2807 0.82 -0.1 2,965,766 - Dshi_2807 0.84 +0.9 2,965,845 - -1.3 2,965,895 - -1.3 2,966,008 + -0.1 2,966,019 + Dshi_2808 0.11 +0.9 2,966,027 - Dshi_2808 0.12 -2.5 2,966,118 + Dshi_2808 0.28 +1.3 2,966,143 + Dshi_2808 0.33 -0.5 2,966,144 + Dshi_2808 0.33 +0.1 2,966,144 + Dshi_2808 0.33 -0.6 2,966,154 + Dshi_2808 0.35 +0.1 2,966,200 + Dshi_2808 0.43 +3.3 2,966,208 - Dshi_2808 0.44 -2.4 2,966,433 + Dshi_2808 0.84 +1.9 2,966,441 - Dshi_2808 0.85 -0.8 2,966,441 - Dshi_2808 0.85 -1.9 2,966,550 + +0.8 2,966,798 - Dshi_2809 0.33 -1.9
Or see this region's nucleotide sequence