Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2792

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2791 and Dshi_2792 are separated by 35 nucleotidesDshi_2792 and Dshi_2793 overlap by 4 nucleotidesDshi_2793 and Dshi_2794 are separated by 22 nucleotides Dshi_2791: Dshi_2791 - hypothetical protein (RefSeq), at 2,950,066 to 2,950,944 _2791 Dshi_2792: Dshi_2792 - toxic anion resistance family protein (RefSeq), at 2,950,980 to 2,952,173 _2792 Dshi_2793: Dshi_2793 - lipoprotein, putative (RefSeq), at 2,952,170 to 2,953,117 _2793 Dshi_2794: Dshi_2794 - hypothetical protein (RefSeq), at 2,953,140 to 2,954,270 _2794 Position (kb) 2950 2951 2952 2953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2950.004 kb on - strandat 2950.012 kb on - strandat 2950.028 kb on + strandat 2950.116 kb on + strandat 2950.124 kb on - strandat 2950.151 kb on + strandat 2950.198 kb on + strand, within Dshi_2791at 2950.247 kb on - strand, within Dshi_2791at 2950.322 kb on - strand, within Dshi_2791at 2950.377 kb on + strand, within Dshi_2791at 2950.385 kb on + strand, within Dshi_2791at 2950.393 kb on - strand, within Dshi_2791at 2950.517 kb on + strand, within Dshi_2791at 2950.527 kb on + strand, within Dshi_2791at 2950.536 kb on - strand, within Dshi_2791at 2950.563 kb on + strand, within Dshi_2791at 2950.620 kb on + strand, within Dshi_2791at 2950.641 kb on + strand, within Dshi_2791at 2950.674 kb on + strand, within Dshi_2791at 2950.812 kb on - strand, within Dshi_2791at 2950.945 kb on + strandat 2951.003 kb on + strandat 2951.191 kb on - strand, within Dshi_2792at 2951.247 kb on + strand, within Dshi_2792at 2951.390 kb on + strand, within Dshi_2792at 2951.390 kb on + strand, within Dshi_2792at 2951.447 kb on + strand, within Dshi_2792at 2951.565 kb on - strand, within Dshi_2792at 2951.587 kb on - strand, within Dshi_2792at 2951.608 kb on + strand, within Dshi_2792at 2951.623 kb on + strand, within Dshi_2792at 2951.696 kb on + strand, within Dshi_2792at 2951.778 kb on + strand, within Dshi_2792at 2951.780 kb on + strand, within Dshi_2792at 2951.788 kb on - strand, within Dshi_2792at 2951.794 kb on - strand, within Dshi_2792at 2951.813 kb on + strand, within Dshi_2792at 2951.847 kb on + strand, within Dshi_2792at 2952.009 kb on + strand, within Dshi_2792at 2952.127 kb on - strandat 2952.147 kb on + strandat 2952.470 kb on - strand, within Dshi_2793at 2952.470 kb on - strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.667 kb on + strand, within Dshi_2793at 2952.817 kb on - strand, within Dshi_2793at 2952.833 kb on + strand, within Dshi_2793at 2952.918 kb on + strand, within Dshi_2793at 2952.947 kb on - strand, within Dshi_2793at 2952.960 kb on - strand, within Dshi_2793at 2953.089 kb on + strandat 2953.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,950,004 - +1.7
2,950,012 - -1.6
2,950,028 + +1.9
2,950,116 + -0.2
2,950,124 - -0.9
2,950,151 + +0.6
2,950,198 + Dshi_2791 0.15 -0.5
2,950,247 - Dshi_2791 0.21 -3.1
2,950,322 - Dshi_2791 0.29 -2.1
2,950,377 + Dshi_2791 0.35 +0.9
2,950,385 + Dshi_2791 0.36 +0.4
2,950,393 - Dshi_2791 0.37 +0.7
2,950,517 + Dshi_2791 0.51 -0.9
2,950,527 + Dshi_2791 0.52 +1.9
2,950,536 - Dshi_2791 0.53 -2.0
2,950,563 + Dshi_2791 0.57 +0.3
2,950,620 + Dshi_2791 0.63 -0.6
2,950,641 + Dshi_2791 0.65 -1.4
2,950,674 + Dshi_2791 0.69 +0.9
2,950,812 - Dshi_2791 0.85 -1.9
2,950,945 + -0.2
2,951,003 + -2.2
2,951,191 - Dshi_2792 0.18 -1.4
2,951,247 + Dshi_2792 0.22 -2.2
2,951,390 + Dshi_2792 0.34 +3.3
2,951,390 + Dshi_2792 0.34 +0.5
2,951,447 + Dshi_2792 0.39 -1.9
2,951,565 - Dshi_2792 0.49 -0.4
2,951,587 - Dshi_2792 0.51 -0.6
2,951,608 + Dshi_2792 0.53 -1.9
2,951,623 + Dshi_2792 0.54 -2.2
2,951,696 + Dshi_2792 0.60 +2.1
2,951,778 + Dshi_2792 0.67 -1.2
2,951,780 + Dshi_2792 0.67 -1.1
2,951,788 - Dshi_2792 0.68 +0.9
2,951,794 - Dshi_2792 0.68 -2.3
2,951,813 + Dshi_2792 0.70 -2.2
2,951,847 + Dshi_2792 0.73 -1.1
2,952,009 + Dshi_2792 0.86 +0.9
2,952,127 - +0.9
2,952,147 + +0.9
2,952,470 - Dshi_2793 0.32 +0.5
2,952,470 - Dshi_2793 0.32 +3.1
2,952,581 + Dshi_2793 0.43 -2.5
2,952,581 + Dshi_2793 0.43 -2.8
2,952,581 + Dshi_2793 0.43 +4.1
2,952,589 - Dshi_2793 0.44 -2.4
2,952,589 - Dshi_2793 0.44 -0.6
2,952,667 + Dshi_2793 0.52 -0.1
2,952,817 - Dshi_2793 0.68 -1.1
2,952,833 + Dshi_2793 0.70 -0.5
2,952,918 + Dshi_2793 0.79 -0.1
2,952,947 - Dshi_2793 0.82 +0.9
2,952,960 - Dshi_2793 0.83 -0.1
2,953,089 + -0.3
2,953,121 - -1.1

Or see this region's nucleotide sequence