Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2777 and Dshi_2778 are separated by 125 nucleotides Dshi_2778 and Dshi_2779 are separated by 179 nucleotides Dshi_2779 and Dshi_2780 are separated by 69 nucleotides Dshi_2780 and Dshi_2781 are separated by 326 nucleotides
Dshi_2777: Dshi_2777 - transcriptional regulator, LysR family (RefSeq), at 2,939,244 to 2,940,098
_2777
Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442
_2778
Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344
_2779
Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887
_2780
Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381
_2781
Position (kb)
2940
2941
2942 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2939.837 kb on - strand, within Dshi_2777 at 2939.982 kb on - strand, within Dshi_2777 at 2940.175 kb on - strand at 2940.244 kb on - strand at 2940.310 kb on - strand, within Dshi_2778 at 2940.394 kb on - strand, within Dshi_2778 at 2940.419 kb on - strand, within Dshi_2778 at 2940.520 kb on + strand at 2940.533 kb on + strand at 2940.803 kb on - strand, within Dshi_2779 at 2941.075 kb on + strand, within Dshi_2779 at 2941.174 kb on + strand, within Dshi_2779 at 2941.453 kb on + strand at 2941.485 kb on - strand, within Dshi_2780 at 2941.871 kb on + strand at 2941.920 kb on - strand at 2941.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,939,837 - Dshi_2777 0.69 +2.4 2,939,982 - Dshi_2777 0.86 +0.9 2,940,175 - +1.4 2,940,244 - +0.9 2,940,310 - Dshi_2778 0.39 +0.7 2,940,394 - Dshi_2778 0.78 +0.2 2,940,419 - Dshi_2778 0.89 +2.1 2,940,520 + +2.5 2,940,533 + +1.5 2,940,803 - Dshi_2779 0.25 -2.1 2,941,075 + Dshi_2779 0.63 +0.7 2,941,174 + Dshi_2779 0.76 -1.1 2,941,453 + +2.9 2,941,485 - Dshi_2780 0.15 -0.2 2,941,871 + +0.9 2,941,920 - +0.5 2,941,956 + +3.2
Or see this region's nucleotide sequence