Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2777 and Dshi_2778 are separated by 125 nucleotides Dshi_2778 and Dshi_2779 are separated by 179 nucleotides Dshi_2779 and Dshi_2780 are separated by 69 nucleotides
Dshi_2777: Dshi_2777 - transcriptional regulator, LysR family (RefSeq), at 2,939,244 to 2,940,098
_2777
Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442
_2778
Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344
_2779
Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887
_2780
Position (kb)
2940
2941 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2939.242 kb on + strand at 2939.260 kb on - strand at 2939.362 kb on - strand, within Dshi_2777 at 2939.400 kb on + strand, within Dshi_2777 at 2939.419 kb on - strand, within Dshi_2777 at 2939.472 kb on - strand, within Dshi_2777 at 2939.521 kb on - strand, within Dshi_2777 at 2939.538 kb on - strand, within Dshi_2777 at 2939.565 kb on + strand, within Dshi_2777 at 2939.837 kb on - strand, within Dshi_2777 at 2939.982 kb on - strand, within Dshi_2777 at 2940.175 kb on - strand at 2940.244 kb on - strand at 2940.310 kb on - strand, within Dshi_2778 at 2940.394 kb on - strand, within Dshi_2778 at 2940.419 kb on - strand, within Dshi_2778 at 2940.520 kb on + strand at 2940.533 kb on + strand at 2940.803 kb on - strand, within Dshi_2779 at 2941.075 kb on + strand, within Dshi_2779 at 2941.174 kb on + strand, within Dshi_2779
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,939,242 + +1.5 2,939,260 - -1.9 2,939,362 - Dshi_2777 0.14 +3.2 2,939,400 + Dshi_2777 0.18 -0.1 2,939,419 - Dshi_2777 0.20 -1.3 2,939,472 - Dshi_2777 0.27 +0.3 2,939,521 - Dshi_2777 0.32 +0.9 2,939,538 - Dshi_2777 0.34 +0.9 2,939,565 + Dshi_2777 0.38 -0.1 2,939,837 - Dshi_2777 0.69 +2.4 2,939,982 - Dshi_2777 0.86 +0.9 2,940,175 - +1.4 2,940,244 - +0.9 2,940,310 - Dshi_2778 0.39 +0.7 2,940,394 - Dshi_2778 0.78 +0.2 2,940,419 - Dshi_2778 0.89 +2.1 2,940,520 + +2.5 2,940,533 + +1.5 2,940,803 - Dshi_2779 0.25 -2.1 2,941,075 + Dshi_2779 0.63 +0.7 2,941,174 + Dshi_2779 0.76 -1.1
Or see this region's nucleotide sequence