Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2744 and Dshi_2745 are separated by 60 nucleotides Dshi_2745 and Dshi_2746 are separated by 31 nucleotides Dshi_2746 and Dshi_2747 are separated by 121 nucleotides Dshi_2747 and Dshi_2748 are separated by 7 nucleotides
Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515
_2744
Dshi_2745: Dshi_2745 - phenazine biosynthesis protein PhzF family (RefSeq), at 2,907,576 to 2,908,436
_2745
Dshi_2746: Dshi_2746 - hypothetical protein (RefSeq), at 2,908,468 to 2,908,728
_2746
Dshi_2747: Dshi_2747 - hypothetical protein (RefSeq), at 2,908,850 to 2,909,440
_2747
Dshi_2748: Dshi_2748 - glutamyl-tRNA synthetase (RefSeq), at 2,909,448 to 2,910,770
_2748
Position (kb)
2908
2909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2907.610 kb on + strand at 2907.677 kb on + strand, within Dshi_2745 at 2907.824 kb on + strand, within Dshi_2745 at 2907.921 kb on - strand, within Dshi_2745 at 2907.935 kb on - strand, within Dshi_2745 at 2907.939 kb on + strand, within Dshi_2745 at 2908.113 kb on + strand, within Dshi_2745 at 2908.397 kb on + strand at 2908.466 kb on + strand at 2908.687 kb on - strand, within Dshi_2746 at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.788 kb on - strand at 2908.921 kb on - strand, within Dshi_2747 at 2908.928 kb on - strand, within Dshi_2747 at 2909.058 kb on + strand, within Dshi_2747 at 2909.135 kb on - strand, within Dshi_2747 at 2909.363 kb on + strand, within Dshi_2747
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,907,610 + +2.8 2,907,677 + Dshi_2745 0.12 -0.9 2,907,824 + Dshi_2745 0.29 +0.9 2,907,921 - Dshi_2745 0.40 +0.9 2,907,935 - Dshi_2745 0.42 -2.4 2,907,939 + Dshi_2745 0.42 -1.2 2,908,113 + Dshi_2745 0.62 -1.4 2,908,397 + -3.0 2,908,466 + -2.6 2,908,687 - Dshi_2746 0.84 -0.2 2,908,780 + -0.1 2,908,780 + +0.9 2,908,780 + +2.3 2,908,780 + +0.4 2,908,780 + -1.4 2,908,780 + +0.9 2,908,788 - -0.6 2,908,921 - Dshi_2747 0.12 +0.9 2,908,928 - Dshi_2747 0.13 +2.4 2,909,058 + Dshi_2747 0.35 +0.4 2,909,135 - Dshi_2747 0.48 +4.0 2,909,363 + Dshi_2747 0.87 -2.3
Or see this region's nucleotide sequence