Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2728 and Dshi_2729 are separated by 78 nucleotides Dshi_2729 and Dshi_2730 are separated by 42 nucleotides Dshi_2730 and Dshi_2731 overlap by 1 nucleotides
Dshi_2728: Dshi_2728 - phosphoribosylamine--glycine ligase (RefSeq), at 2,890,448 to 2,891,710
_2728
Dshi_2729: Dshi_2729 - Ion transport 2 domain protein (RefSeq), at 2,891,789 to 2,892,655
_2729
Dshi_2730: Dshi_2730 - FG-GAP repeat domain protein (RefSeq), at 2,892,698 to 2,893,456
_2730
Dshi_2731: Dshi_2731 - ferredoxin (RefSeq), at 2,893,456 to 2,893,779
_2731
Position (kb)
2891
2892
2893 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2890.954 kb on + strand, within Dshi_2728 at 2890.987 kb on - strand, within Dshi_2728 at 2891.078 kb on + strand, within Dshi_2728 at 2891.629 kb on + strand at 2891.637 kb on - strand at 2891.664 kb on + strand at 2891.665 kb on + strand at 2891.713 kb on - strand at 2891.753 kb on - strand at 2891.794 kb on + strand at 2891.794 kb on + strand at 2891.807 kb on - strand at 2891.828 kb on + strand at 2891.914 kb on - strand, within Dshi_2729 at 2891.934 kb on - strand, within Dshi_2729 at 2891.955 kb on + strand, within Dshi_2729 at 2891.955 kb on + strand, within Dshi_2729 at 2891.963 kb on - strand, within Dshi_2729 at 2891.963 kb on - strand, within Dshi_2729 at 2891.991 kb on - strand, within Dshi_2729 at 2892.302 kb on + strand, within Dshi_2729 at 2892.713 kb on + strand at 2892.795 kb on - strand, within Dshi_2730 at 2892.795 kb on - strand, within Dshi_2730 at 2892.861 kb on - strand, within Dshi_2730 at 2893.016 kb on - strand, within Dshi_2730 at 2893.019 kb on - strand, within Dshi_2730 at 2893.031 kb on + strand, within Dshi_2730 at 2893.145 kb on + strand, within Dshi_2730 at 2893.248 kb on - strand, within Dshi_2730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,890,954 + Dshi_2728 0.40 +0.9 2,890,987 - Dshi_2728 0.43 +1.0 2,891,078 + Dshi_2728 0.50 -0.3 2,891,629 + +1.6 2,891,637 - +0.2 2,891,664 + +0.4 2,891,665 + -1.0 2,891,713 - -0.3 2,891,753 - -0.1 2,891,794 + -0.1 2,891,794 + -1.6 2,891,807 - -1.6 2,891,828 + +0.7 2,891,914 - Dshi_2729 0.14 +0.6 2,891,934 - Dshi_2729 0.17 -1.6 2,891,955 + Dshi_2729 0.19 -0.8 2,891,955 + Dshi_2729 0.19 -0.1 2,891,963 - Dshi_2729 0.20 -1.1 2,891,963 - Dshi_2729 0.20 -1.3 2,891,991 - Dshi_2729 0.23 -0.5 2,892,302 + Dshi_2729 0.59 +1.7 2,892,713 + +0.0 2,892,795 - Dshi_2730 0.13 -1.1 2,892,795 - Dshi_2730 0.13 +1.3 2,892,861 - Dshi_2730 0.21 +0.8 2,893,016 - Dshi_2730 0.42 +1.8 2,893,019 - Dshi_2730 0.42 -2.6 2,893,031 + Dshi_2730 0.44 +3.9 2,893,145 + Dshi_2730 0.59 +0.9 2,893,248 - Dshi_2730 0.72 -1.8
Or see this region's nucleotide sequence