Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2704

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2702 and Dshi_2703 are separated by 73 nucleotidesDshi_2703 and Dshi_2704 are separated by 160 nucleotidesDshi_2704 and Dshi_2705 are separated by 17 nucleotides Dshi_2702: Dshi_2702 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 2,862,502 to 2,863,494 _2702 Dshi_2703: Dshi_2703 - hypothetical protein (RefSeq), at 2,863,568 to 2,863,975 _2703 Dshi_2704: Dshi_2704 - porphobilinogen deaminase (RefSeq), at 2,864,136 to 2,865,179 _2704 Dshi_2705: Dshi_2705 - uroporphyrinogen decarboxylase (RefSeq), at 2,865,197 to 2,866,231 _2705 Position (kb) 2864 2865 2866Strain fitness (log2 ratio) -1 0 1 2 3 4at 2863.601 kb on + strandat 2863.611 kb on - strand, within Dshi_2703at 2863.746 kb on - strand, within Dshi_2703at 2863.910 kb on + strand, within Dshi_2703at 2863.968 kb on - strandat 2863.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,863,601 + +2.3
2,863,611 - Dshi_2703 0.11 +3.9
2,863,746 - Dshi_2703 0.44 +0.9
2,863,910 + Dshi_2703 0.84 +0.8
2,863,968 - +0.5
2,863,998 + +0.9

Or see this region's nucleotide sequence