Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2685 and Dshi_2686 are separated by 302 nucleotides Dshi_2686 and Dshi_2687 are separated by 226 nucleotides Dshi_2687 and Dshi_2688 are separated by 277 nucleotides
Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659
_2685
Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378
_2686
Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090
_2687
Dshi_2688: Dshi_2688 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 2,848,368 to 2,849,762
_2688
Position (kb)
2847
2848
2849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2846.957 kb on + strand at 2846.964 kb on - strand at 2846.989 kb on + strand at 2847.050 kb on - strand, within Dshi_2686 at 2847.056 kb on + strand, within Dshi_2686 at 2847.100 kb on + strand, within Dshi_2686 at 2847.158 kb on + strand, within Dshi_2686 at 2847.171 kb on - strand, within Dshi_2686 at 2847.202 kb on - strand, within Dshi_2686 at 2847.240 kb on + strand, within Dshi_2686 at 2847.240 kb on + strand, within Dshi_2686 at 2847.647 kb on - strand at 2847.671 kb on + strand, within Dshi_2687 at 2847.672 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.690 kb on - strand, within Dshi_2687 at 2847.726 kb on - strand, within Dshi_2687 at 2847.754 kb on + strand, within Dshi_2687 at 2847.846 kb on - strand, within Dshi_2687 at 2847.954 kb on + strand, within Dshi_2687 at 2848.016 kb on - strand, within Dshi_2687 at 2848.044 kb on - strand at 2848.051 kb on - strand at 2848.469 kb on - strand at 2848.572 kb on + strand, within Dshi_2688 at 2848.728 kb on - strand, within Dshi_2688 at 2848.832 kb on - strand, within Dshi_2688 at 2848.890 kb on - strand, within Dshi_2688 at 2848.912 kb on + strand, within Dshi_2688 at 2848.912 kb on + strand, within Dshi_2688 at 2848.919 kb on - strand, within Dshi_2688 at 2848.933 kb on - strand, within Dshi_2688 at 2849.025 kb on + strand, within Dshi_2688
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,846,957 + -0.1 2,846,964 - +1.5 2,846,989 + +0.9 2,847,050 - Dshi_2686 0.21 +0.9 2,847,056 + Dshi_2686 0.23 +0.9 2,847,100 + Dshi_2686 0.33 -1.4 2,847,158 + Dshi_2686 0.47 -0.7 2,847,171 - Dshi_2686 0.50 -2.8 2,847,202 - Dshi_2686 0.58 -2.1 2,847,240 + Dshi_2686 0.67 -0.1 2,847,240 + Dshi_2686 0.67 +0.9 2,847,647 - -2.4 2,847,671 + Dshi_2687 0.14 -2.5 2,847,672 + Dshi_2687 0.14 +3.1 2,847,682 + Dshi_2687 0.16 +1.2 2,847,682 + Dshi_2687 0.16 -1.9 2,847,682 + Dshi_2687 0.16 +0.6 2,847,682 + Dshi_2687 0.16 -1.9 2,847,690 - Dshi_2687 0.17 +1.2 2,847,726 - Dshi_2687 0.25 +1.5 2,847,754 + Dshi_2687 0.31 -1.7 2,847,846 - Dshi_2687 0.50 +0.5 2,847,954 + Dshi_2687 0.72 -1.1 2,848,016 - Dshi_2687 0.85 -0.1 2,848,044 - +0.9 2,848,051 - +1.1 2,848,469 - +5.2 2,848,572 + Dshi_2688 0.15 +1.1 2,848,728 - Dshi_2688 0.26 -2.5 2,848,832 - Dshi_2688 0.33 +0.4 2,848,890 - Dshi_2688 0.37 +0.4 2,848,912 + Dshi_2688 0.39 +0.9 2,848,912 + Dshi_2688 0.39 +0.8 2,848,919 - Dshi_2688 0.39 +0.9 2,848,933 - Dshi_2688 0.41 +1.4 2,849,025 + Dshi_2688 0.47 -4.5
Or see this region's nucleotide sequence