Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2680
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,838,252 | + | Dshi_2679 | 0.78 | +0.9 | |
2,838,274 | + | Dshi_2679 | 0.79 | +0.9 | |
2,838,295 | - | Dshi_2679 | 0.80 | -0.7 | |
2,838,795 | - | +2.1 | |||
2,839,071 | + | +0.7 | |||
2,839,111 | + | +0.9 | |||
2,839,213 | - | +3.2 | |||
2,839,229 | + | +1.1 | |||
2,839,312 | - | +1.9 | |||
2,839,412 | - | +2.9 | |||
2,839,771 | - | Dshi_2680 | 0.20 | +0.9 | |
2,839,979 | - | Dshi_2680 | 0.27 | -3.3 | |
2,840,327 | - | Dshi_2680 | 0.39 | +0.9 | |
2,840,360 | - | Dshi_2680 | 0.40 | -0.1 | |
2,840,531 | + | Dshi_2680 | 0.46 | +0.9 | |
2,840,618 | - | Dshi_2680 | 0.49 | +2.2 | |
2,840,799 | - | Dshi_2680 | 0.56 | -0.1 | |
2,840,850 | - | Dshi_2680 | 0.57 | +0.9 | |
2,840,990 | + | Dshi_2680 | 0.62 | -0.7 | |
2,841,057 | + | Dshi_2680 | 0.65 | -2.1 | |
2,841,079 | + | Dshi_2680 | 0.65 | +0.9 | |
2,841,102 | + | Dshi_2680 | 0.66 | -0.9 | |
2,841,171 | + | Dshi_2680 | 0.69 | +0.9 | |
2,841,441 | - | Dshi_2680 | 0.78 | -0.1 | |
2,841,456 | - | Dshi_2680 | 0.78 | -2.1 | |
2,841,735 | - | Dshi_2680 | 0.88 | -2.9 | |
2,841,744 | + | +0.9 | |||
2,842,108 | - | -0.7 | |||
2,842,161 | + | +1.4 | |||
2,842,236 | - | Dshi_2681 | 0.20 | +0.9 | |
2,842,293 | - | Dshi_2681 | 0.35 | -2.9 | |
2,842,359 | - | Dshi_2681 | 0.53 | +0.9 | |
2,842,847 | + | Dshi_2682 | 0.28 | +1.9 |
Or see this region's nucleotide sequence