Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2680

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2679 and Dshi_2680 are separated by 410 nucleotidesDshi_2680 and Dshi_2681 are separated by 91 nucleotidesDshi_2681 and Dshi_2682 are separated by 13 nucleotides Dshi_2679: Dshi_2679 - protein of unknown function DUF214 (RefSeq), at 2,836,269 to 2,838,797 _2679 Dshi_2680: Dshi_2680 - glycine dehydrogenase (RefSeq), at 2,839,208 to 2,842,072 _2680 Dshi_2681: Dshi_2681 - glycine cleavage system H protein (RefSeq), at 2,842,164 to 2,842,532 _2681 Dshi_2682: Dshi_2682 - glycine cleavage system T protein (RefSeq), at 2,842,546 to 2,843,631 _2682 Position (kb) 2839 2840 2841 2842 2843Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2838.252 kb on + strand, within Dshi_2679at 2838.274 kb on + strand, within Dshi_2679at 2838.295 kb on - strand, within Dshi_2679at 2838.795 kb on - strandat 2839.071 kb on + strandat 2839.111 kb on + strandat 2839.213 kb on - strandat 2839.229 kb on + strandat 2839.312 kb on - strandat 2839.412 kb on - strandat 2839.771 kb on - strand, within Dshi_2680at 2839.979 kb on - strand, within Dshi_2680at 2840.327 kb on - strand, within Dshi_2680at 2840.360 kb on - strand, within Dshi_2680at 2840.531 kb on + strand, within Dshi_2680at 2840.618 kb on - strand, within Dshi_2680at 2840.799 kb on - strand, within Dshi_2680at 2840.850 kb on - strand, within Dshi_2680at 2840.990 kb on + strand, within Dshi_2680at 2841.057 kb on + strand, within Dshi_2680at 2841.079 kb on + strand, within Dshi_2680at 2841.102 kb on + strand, within Dshi_2680at 2841.171 kb on + strand, within Dshi_2680at 2841.441 kb on - strand, within Dshi_2680at 2841.456 kb on - strand, within Dshi_2680at 2841.735 kb on - strand, within Dshi_2680at 2841.744 kb on + strandat 2842.108 kb on - strandat 2842.161 kb on + strandat 2842.236 kb on - strand, within Dshi_2681at 2842.293 kb on - strand, within Dshi_2681at 2842.359 kb on - strand, within Dshi_2681at 2842.847 kb on + strand, within Dshi_2682

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,838,252 + Dshi_2679 0.78 +0.9
2,838,274 + Dshi_2679 0.79 +0.9
2,838,295 - Dshi_2679 0.80 -0.7
2,838,795 - +2.1
2,839,071 + +0.7
2,839,111 + +0.9
2,839,213 - +3.2
2,839,229 + +1.1
2,839,312 - +1.9
2,839,412 - +2.9
2,839,771 - Dshi_2680 0.20 +0.9
2,839,979 - Dshi_2680 0.27 -3.3
2,840,327 - Dshi_2680 0.39 +0.9
2,840,360 - Dshi_2680 0.40 -0.1
2,840,531 + Dshi_2680 0.46 +0.9
2,840,618 - Dshi_2680 0.49 +2.2
2,840,799 - Dshi_2680 0.56 -0.1
2,840,850 - Dshi_2680 0.57 +0.9
2,840,990 + Dshi_2680 0.62 -0.7
2,841,057 + Dshi_2680 0.65 -2.1
2,841,079 + Dshi_2680 0.65 +0.9
2,841,102 + Dshi_2680 0.66 -0.9
2,841,171 + Dshi_2680 0.69 +0.9
2,841,441 - Dshi_2680 0.78 -0.1
2,841,456 - Dshi_2680 0.78 -2.1
2,841,735 - Dshi_2680 0.88 -2.9
2,841,744 + +0.9
2,842,108 - -0.7
2,842,161 + +1.4
2,842,236 - Dshi_2681 0.20 +0.9
2,842,293 - Dshi_2681 0.35 -2.9
2,842,359 - Dshi_2681 0.53 +0.9
2,842,847 + Dshi_2682 0.28 +1.9

Or see this region's nucleotide sequence