Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2623 and Dshi_2624 are separated by 136 nucleotides Dshi_2624 and Dshi_2625 are separated by 9 nucleotides Dshi_2625 and Dshi_2626 are separated by 103 nucleotides Dshi_2626 and Dshi_2627 are separated by 1 nucleotides Dshi_2627 and Dshi_2628 overlap by 4 nucleotides
Dshi_2623: Dshi_2623 - peptidase M48 Ste24p (RefSeq), at 2,782,469 to 2,783,221
_2623
Dshi_2624: Dshi_2624 - hypothetical protein (RefSeq), at 2,783,358 to 2,783,780
_2624
Dshi_2625: Dshi_2625 - hypothetical protein (RefSeq), at 2,783,790 to 2,784,044
_2625
Dshi_2626: Dshi_2626 - major facilitator superfamily MFS_1 (RefSeq), at 2,784,148 to 2,785,326
_2626
Dshi_2627: Dshi_2627 - nitroreductase (RefSeq), at 2,785,328 to 2,785,978
_2627
Dshi_2628: Dshi_2628 - hypothetical protein (RefSeq), at 2,785,975 to 2,786,685
_2628
Position (kb)
2784
2785
2786 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2783.349 kb on - strand at 2783.377 kb on - strand at 2783.523 kb on + strand, within Dshi_2624 at 2783.526 kb on - strand, within Dshi_2624 at 2783.526 kb on - strand, within Dshi_2624 at 2783.531 kb on - strand, within Dshi_2624 at 2783.531 kb on - strand, within Dshi_2624 at 2783.536 kb on - strand, within Dshi_2624 at 2783.582 kb on - strand, within Dshi_2624 at 2783.687 kb on - strand, within Dshi_2624 at 2783.694 kb on - strand, within Dshi_2624 at 2783.845 kb on - strand, within Dshi_2625 at 2783.864 kb on - strand, within Dshi_2625 at 2783.907 kb on - strand, within Dshi_2625 at 2783.908 kb on + strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.979 kb on + strand, within Dshi_2625 at 2783.987 kb on - strand, within Dshi_2625 at 2784.146 kb on + strand at 2784.169 kb on + strand at 2784.191 kb on + strand at 2784.239 kb on - strand at 2784.260 kb on - strand at 2784.263 kb on + strand at 2784.263 kb on + strand at 2784.282 kb on - strand, within Dshi_2626 at 2784.698 kb on - strand, within Dshi_2626 at 2784.702 kb on - strand, within Dshi_2626 at 2784.744 kb on + strand, within Dshi_2626 at 2785.228 kb on - strand at 2785.391 kb on - strand at 2785.493 kb on + strand, within Dshi_2627 at 2785.580 kb on + strand, within Dshi_2627 at 2785.588 kb on - strand, within Dshi_2627 at 2785.603 kb on + strand, within Dshi_2627 at 2785.821 kb on + strand, within Dshi_2627 at 2785.931 kb on - strand at 2786.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,783,349 - +1.8 2,783,377 - +2.4 2,783,523 + Dshi_2624 0.39 -0.2 2,783,526 - Dshi_2624 0.40 +1.0 2,783,526 - Dshi_2624 0.40 +1.1 2,783,531 - Dshi_2624 0.41 +0.8 2,783,531 - Dshi_2624 0.41 +0.8 2,783,536 - Dshi_2624 0.42 +0.5 2,783,582 - Dshi_2624 0.53 +0.8 2,783,687 - Dshi_2624 0.78 -0.2 2,783,694 - Dshi_2624 0.79 -1.3 2,783,845 - Dshi_2625 0.22 -0.9 2,783,864 - Dshi_2625 0.29 +0.8 2,783,907 - Dshi_2625 0.46 +0.8 2,783,908 + Dshi_2625 0.46 +1.1 2,783,933 - Dshi_2625 0.56 +0.8 2,783,933 - Dshi_2625 0.56 +3.1 2,783,933 - Dshi_2625 0.56 +1.0 2,783,933 - Dshi_2625 0.56 -2.0 2,783,979 + Dshi_2625 0.74 +0.8 2,783,987 - Dshi_2625 0.77 -0.4 2,784,146 + +0.8 2,784,169 + -2.6 2,784,191 + +1.2 2,784,239 - -0.4 2,784,260 - -1.8 2,784,263 + -1.4 2,784,263 + +3.1 2,784,282 - Dshi_2626 0.11 -2.3 2,784,698 - Dshi_2626 0.47 +2.8 2,784,702 - Dshi_2626 0.47 +1.7 2,784,744 + Dshi_2626 0.51 +0.4 2,785,228 - -0.8 2,785,391 - +0.8 2,785,493 + Dshi_2627 0.25 +0.8 2,785,580 + Dshi_2627 0.39 -0.8 2,785,588 - Dshi_2627 0.40 +1.8 2,785,603 + Dshi_2627 0.42 -1.0 2,785,821 + Dshi_2627 0.76 +0.8 2,785,931 - -2.2 2,786,043 + -0.2
Or see this region's nucleotide sequence