Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2462 and Dshi_2463 overlap by 8 nucleotides Dshi_2463 and Dshi_2464 are separated by 217 nucleotides Dshi_2464 and Dshi_2465 are separated by 12 nucleotides
Dshi_2462: Dshi_2462 - Rhs element Vgr protein (RefSeq), at 2,612,931 to 2,614,718
_2462
Dshi_2463: Dshi_2463 - hypothetical protein (RefSeq), at 2,614,711 to 2,615,373
_2463
Dshi_2464: Dshi_2464 - conserved hypothetical phage tail protein (RefSeq), at 2,615,591 to 2,616,073
_2464
Dshi_2465: Dshi_2465 - conserved hypothetical phage tail protein (RefSeq), at 2,616,086 to 2,616,544
_2465
Position (kb)
2614
2615
2616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2613.737 kb on - strand, within Dshi_2462 at 2613.738 kb on + strand, within Dshi_2462 at 2613.738 kb on - strand, within Dshi_2462 at 2613.759 kb on - strand, within Dshi_2462 at 2613.772 kb on - strand, within Dshi_2462 at 2613.777 kb on - strand, within Dshi_2462 at 2613.828 kb on - strand, within Dshi_2462 at 2613.830 kb on + strand, within Dshi_2462 at 2613.830 kb on + strand, within Dshi_2462 at 2613.833 kb on - strand, within Dshi_2462 at 2613.887 kb on + strand, within Dshi_2462 at 2613.928 kb on - strand, within Dshi_2462 at 2614.014 kb on - strand, within Dshi_2462 at 2614.169 kb on + strand, within Dshi_2462 at 2614.185 kb on - strand, within Dshi_2462 at 2614.201 kb on + strand, within Dshi_2462 at 2614.204 kb on - strand, within Dshi_2462 at 2614.277 kb on + strand, within Dshi_2462 at 2614.280 kb on - strand, within Dshi_2462 at 2614.338 kb on + strand, within Dshi_2462 at 2614.359 kb on + strand, within Dshi_2462 at 2614.372 kb on - strand, within Dshi_2462 at 2614.461 kb on - strand, within Dshi_2462 at 2614.465 kb on + strand, within Dshi_2462 at 2614.539 kb on - strand, within Dshi_2462 at 2614.568 kb on - strand at 2614.573 kb on - strand at 2614.657 kb on + strand at 2614.662 kb on + strand at 2614.677 kb on + strand at 2614.823 kb on - strand, within Dshi_2463 at 2614.825 kb on + strand, within Dshi_2463 at 2614.826 kb on + strand, within Dshi_2463 at 2614.833 kb on - strand, within Dshi_2463 at 2614.833 kb on - strand, within Dshi_2463 at 2614.843 kb on - strand, within Dshi_2463 at 2614.918 kb on + strand, within Dshi_2463 at 2615.009 kb on - strand, within Dshi_2463 at 2615.010 kb on + strand, within Dshi_2463 at 2615.018 kb on - strand, within Dshi_2463 at 2615.057 kb on + strand, within Dshi_2463 at 2615.065 kb on - strand, within Dshi_2463 at 2615.075 kb on - strand, within Dshi_2463 at 2615.242 kb on - strand, within Dshi_2463 at 2615.293 kb on - strand, within Dshi_2463 at 2615.293 kb on - strand, within Dshi_2463 at 2615.410 kb on - strand at 2615.486 kb on + strand at 2615.486 kb on + strand at 2615.494 kb on - strand at 2615.510 kb on + strand at 2615.566 kb on - strand at 2615.583 kb on - strand at 2615.613 kb on + strand at 2615.652 kb on - strand, within Dshi_2464 at 2615.687 kb on - strand, within Dshi_2464 at 2615.719 kb on - strand, within Dshi_2464 at 2615.762 kb on - strand, within Dshi_2464 at 2615.767 kb on - strand, within Dshi_2464 at 2615.776 kb on + strand, within Dshi_2464 at 2615.784 kb on + strand, within Dshi_2464 at 2615.828 kb on - strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.966 kb on - strand, within Dshi_2464 at 2615.975 kb on + strand, within Dshi_2464 at 2616.013 kb on - strand, within Dshi_2464 at 2616.047 kb on - strand at 2616.136 kb on - strand, within Dshi_2465 at 2616.156 kb on + strand, within Dshi_2465 at 2616.164 kb on - strand, within Dshi_2465 at 2616.191 kb on + strand, within Dshi_2465 at 2616.250 kb on - strand, within Dshi_2465 at 2616.267 kb on + strand, within Dshi_2465 at 2616.284 kb on - strand, within Dshi_2465 at 2616.286 kb on + strand, within Dshi_2465 at 2616.286 kb on + strand, within Dshi_2465 at 2616.294 kb on - strand, within Dshi_2465 at 2616.294 kb on - strand, within Dshi_2465
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,613,737 - Dshi_2462 0.45 +0.8 2,613,738 + Dshi_2462 0.45 -0.8 2,613,738 - Dshi_2462 0.45 -1.2 2,613,759 - Dshi_2462 0.46 -1.7 2,613,772 - Dshi_2462 0.47 +0.4 2,613,777 - Dshi_2462 0.47 -0.7 2,613,828 - Dshi_2462 0.50 -1.4 2,613,830 + Dshi_2462 0.50 -0.8 2,613,830 + Dshi_2462 0.50 +1.6 2,613,833 - Dshi_2462 0.50 -0.0 2,613,887 + Dshi_2462 0.53 -0.9 2,613,928 - Dshi_2462 0.56 -1.7 2,614,014 - Dshi_2462 0.61 -2.0 2,614,169 + Dshi_2462 0.69 +0.4 2,614,185 - Dshi_2462 0.70 -1.5 2,614,201 + Dshi_2462 0.71 -0.2 2,614,204 - Dshi_2462 0.71 -0.3 2,614,277 + Dshi_2462 0.75 -0.1 2,614,280 - Dshi_2462 0.75 -1.5 2,614,338 + Dshi_2462 0.79 -3.7 2,614,359 + Dshi_2462 0.80 +0.8 2,614,372 - Dshi_2462 0.81 -2.7 2,614,461 - Dshi_2462 0.86 -3.0 2,614,465 + Dshi_2462 0.86 -3.2 2,614,539 - Dshi_2462 0.90 -0.7 2,614,568 - +0.6 2,614,573 - -2.0 2,614,657 + -0.1 2,614,662 + -1.0 2,614,677 + +0.2 2,614,823 - Dshi_2463 0.17 +2.0 2,614,825 + Dshi_2463 0.17 -0.7 2,614,826 + Dshi_2463 0.17 -0.3 2,614,833 - Dshi_2463 0.18 +0.4 2,614,833 - Dshi_2463 0.18 -0.7 2,614,843 - Dshi_2463 0.20 -0.2 2,614,918 + Dshi_2463 0.31 +0.1 2,615,009 - Dshi_2463 0.45 -1.2 2,615,010 + Dshi_2463 0.45 -2.2 2,615,018 - Dshi_2463 0.46 -0.7 2,615,057 + Dshi_2463 0.52 -1.6 2,615,065 - Dshi_2463 0.53 -1.9 2,615,075 - Dshi_2463 0.55 +1.0 2,615,242 - Dshi_2463 0.80 -2.3 2,615,293 - Dshi_2463 0.88 +0.8 2,615,293 - Dshi_2463 0.88 +1.3 2,615,410 - +1.1 2,615,486 + -0.1 2,615,486 + -0.4 2,615,494 - +0.3 2,615,510 + -0.8 2,615,566 - +1.5 2,615,583 - -1.4 2,615,613 + +2.4 2,615,652 - Dshi_2464 0.13 +1.8 2,615,687 - Dshi_2464 0.20 +0.1 2,615,719 - Dshi_2464 0.27 -0.8 2,615,762 - Dshi_2464 0.35 -2.0 2,615,767 - Dshi_2464 0.36 -3.1 2,615,776 + Dshi_2464 0.38 -0.6 2,615,784 + Dshi_2464 0.40 +0.8 2,615,828 - Dshi_2464 0.49 +1.8 2,615,958 + Dshi_2464 0.76 -2.2 2,615,958 + Dshi_2464 0.76 -1.2 2,615,958 + Dshi_2464 0.76 +1.2 2,615,958 + Dshi_2464 0.76 -0.3 2,615,966 - Dshi_2464 0.78 -1.8 2,615,975 + Dshi_2464 0.80 +2.8 2,616,013 - Dshi_2464 0.87 -2.0 2,616,047 - +0.2 2,616,136 - Dshi_2465 0.11 -0.4 2,616,156 + Dshi_2465 0.15 -0.7 2,616,164 - Dshi_2465 0.17 +3.2 2,616,191 + Dshi_2465 0.23 -0.2 2,616,250 - Dshi_2465 0.36 +4.0 2,616,267 + Dshi_2465 0.39 +1.3 2,616,284 - Dshi_2465 0.43 -3.0 2,616,286 + Dshi_2465 0.44 -0.7 2,616,286 + Dshi_2465 0.44 +0.7 2,616,294 - Dshi_2465 0.45 -2.7 2,616,294 - Dshi_2465 0.45 -0.1
Or see this region's nucleotide sequence