Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2254 and Dshi_2255 are separated by 77 nucleotides Dshi_2255 and Dshi_2256 overlap by 4 nucleotides
Dshi_2254: Dshi_2254 - polysaccharide export protein (RefSeq), at 2,375,007 to 2,376,164
_2254
Dshi_2255: Dshi_2255 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,376,242 to 2,378,218
_2255
Dshi_2256: Dshi_2256 - riboflavin biosynthesis protein RibD (RefSeq), at 2,378,215 to 2,379,312
_2256
Position (kb)
2376
2377
2378
2379 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2375.244 kb on + strand, within Dshi_2254 at 2375.310 kb on + strand, within Dshi_2254 at 2375.581 kb on + strand, within Dshi_2254 at 2375.943 kb on + strand, within Dshi_2254 at 2375.943 kb on + strand, within Dshi_2254 at 2376.057 kb on + strand at 2376.089 kb on + strand at 2376.254 kb on - strand at 2376.382 kb on + strand at 2376.390 kb on - strand at 2376.400 kb on - strand at 2376.493 kb on - strand, within Dshi_2255 at 2376.550 kb on + strand, within Dshi_2255 at 2376.558 kb on - strand, within Dshi_2255 at 2376.568 kb on + strand, within Dshi_2255 at 2376.576 kb on - strand, within Dshi_2255 at 2376.809 kb on + strand, within Dshi_2255 at 2377.120 kb on + strand, within Dshi_2255 at 2377.170 kb on - strand, within Dshi_2255 at 2377.186 kb on + strand, within Dshi_2255 at 2377.301 kb on + strand, within Dshi_2255 at 2377.309 kb on - strand, within Dshi_2255 at 2377.396 kb on - strand, within Dshi_2255 at 2377.527 kb on - strand, within Dshi_2255 at 2377.529 kb on + strand, within Dshi_2255 at 2377.571 kb on - strand, within Dshi_2255 at 2377.607 kb on - strand, within Dshi_2255 at 2377.681 kb on + strand, within Dshi_2255 at 2377.751 kb on - strand, within Dshi_2255 at 2377.909 kb on + strand, within Dshi_2255 at 2377.968 kb on + strand, within Dshi_2255 at 2378.046 kb on - strand at 2378.046 kb on - strand at 2378.061 kb on + strand at 2378.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,375,244 + Dshi_2254 0.20 -3.8 2,375,310 + Dshi_2254 0.26 +4.0 2,375,581 + Dshi_2254 0.50 -1.5 2,375,943 + Dshi_2254 0.81 -3.0 2,375,943 + Dshi_2254 0.81 -2.0 2,376,057 + +0.6 2,376,089 + -1.5 2,376,254 - +0.2 2,376,382 + -0.3 2,376,390 - +0.2 2,376,400 - -3.0 2,376,493 - Dshi_2255 0.13 +1.4 2,376,550 + Dshi_2255 0.16 -0.2 2,376,558 - Dshi_2255 0.16 -0.2 2,376,568 + Dshi_2255 0.16 +3.6 2,376,576 - Dshi_2255 0.17 -0.8 2,376,809 + Dshi_2255 0.29 -0.2 2,377,120 + Dshi_2255 0.44 +0.6 2,377,170 - Dshi_2255 0.47 +1.4 2,377,186 + Dshi_2255 0.48 -0.8 2,377,301 + Dshi_2255 0.54 -0.8 2,377,309 - Dshi_2255 0.54 +2.5 2,377,396 - Dshi_2255 0.58 +0.5 2,377,527 - Dshi_2255 0.65 +0.6 2,377,529 + Dshi_2255 0.65 -1.1 2,377,571 - Dshi_2255 0.67 -0.9 2,377,607 - Dshi_2255 0.69 -0.5 2,377,681 + Dshi_2255 0.73 -4.3 2,377,751 - Dshi_2255 0.76 -1.1 2,377,909 + Dshi_2255 0.84 -0.3 2,377,968 + Dshi_2255 0.87 -0.3 2,378,046 - -0.2 2,378,046 - +0.1 2,378,061 + +1.1 2,378,070 + +4.3
Or see this region's nucleotide sequence