Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2143

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2141 and Dshi_2142 are separated by 109 nucleotidesDshi_2142 and Dshi_2143 are separated by 84 nucleotidesDshi_2143 and Dshi_2144 are separated by 117 nucleotides Dshi_2141: Dshi_2141 - hypothetical protein (RefSeq), at 2,271,249 to 2,271,968 _2141 Dshi_2142: Dshi_2142 - ferric uptake regulator, Fur family (RefSeq), at 2,272,078 to 2,272,491 _2142 Dshi_2143: Dshi_2143 - Pirin domain protein (RefSeq), at 2,272,576 to 2,273,487 _2143 Dshi_2144: Dshi_2144 - Threonine aldolase (RefSeq), at 2,273,605 to 2,274,639 _2144 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2271.590 kb on - strand, within Dshi_2141at 2271.766 kb on - strand, within Dshi_2141at 2271.821 kb on + strand, within Dshi_2141at 2271.821 kb on + strand, within Dshi_2141at 2272.250 kb on + strand, within Dshi_2142at 2272.252 kb on + strand, within Dshi_2142at 2272.314 kb on + strand, within Dshi_2142at 2272.509 kb on - strandat 2272.647 kb on - strandat 2272.728 kb on - strand, within Dshi_2143at 2272.738 kb on + strand, within Dshi_2143at 2272.792 kb on + strand, within Dshi_2143at 2272.959 kb on + strand, within Dshi_2143at 2273.309 kb on - strand, within Dshi_2143at 2273.433 kb on + strandat 2273.469 kb on + strandat 2273.469 kb on + strandat 2273.469 kb on + strandat 2273.477 kb on - strandat 2273.562 kb on + strandat 2273.600 kb on - strandat 2273.617 kb on + strandat 2273.749 kb on + strand, within Dshi_2144at 2273.757 kb on - strand, within Dshi_2144at 2273.822 kb on - strand, within Dshi_2144at 2273.903 kb on + strand, within Dshi_2144at 2273.924 kb on + strand, within Dshi_2144at 2273.932 kb on - strand, within Dshi_2144at 2273.959 kb on + strand, within Dshi_2144at 2273.972 kb on + strand, within Dshi_2144at 2274.008 kb on - strand, within Dshi_2144at 2274.068 kb on - strand, within Dshi_2144at 2274.109 kb on - strand, within Dshi_2144at 2274.109 kb on - strand, within Dshi_2144at 2274.144 kb on - strand, within Dshi_2144at 2274.190 kb on + strand, within Dshi_2144at 2274.192 kb on + strand, within Dshi_2144at 2274.202 kb on + strand, within Dshi_2144at 2274.207 kb on + strand, within Dshi_2144at 2274.321 kb on + strand, within Dshi_2144at 2274.342 kb on - strand, within Dshi_2144

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,271,590 - Dshi_2141 0.47 +0.2
2,271,766 - Dshi_2141 0.72 +1.3
2,271,821 + Dshi_2141 0.79 +0.0
2,271,821 + Dshi_2141 0.79 +0.8
2,272,250 + Dshi_2142 0.42 -0.2
2,272,252 + Dshi_2142 0.42 +0.6
2,272,314 + Dshi_2142 0.57 -0.7
2,272,509 - -0.2
2,272,647 - +1.9
2,272,728 - Dshi_2143 0.17 +2.3
2,272,738 + Dshi_2143 0.18 +1.5
2,272,792 + Dshi_2143 0.24 +4.1
2,272,959 + Dshi_2143 0.42 +0.1
2,273,309 - Dshi_2143 0.80 +0.7
2,273,433 + +0.8
2,273,469 + +3.6
2,273,469 + -1.6
2,273,469 + +1.9
2,273,477 - +1.3
2,273,562 + +3.6
2,273,600 - -1.6
2,273,617 + +2.6
2,273,749 + Dshi_2144 0.14 -1.2
2,273,757 - Dshi_2144 0.15 -2.0
2,273,822 - Dshi_2144 0.21 -1.2
2,273,903 + Dshi_2144 0.29 +0.1
2,273,924 + Dshi_2144 0.31 -2.7
2,273,932 - Dshi_2144 0.32 +0.7
2,273,959 + Dshi_2144 0.34 +1.5
2,273,972 + Dshi_2144 0.35 -1.6
2,274,008 - Dshi_2144 0.39 +2.0
2,274,068 - Dshi_2144 0.45 +2.9
2,274,109 - Dshi_2144 0.49 +1.3
2,274,109 - Dshi_2144 0.49 +2.3
2,274,144 - Dshi_2144 0.52 +2.8
2,274,190 + Dshi_2144 0.57 -0.1
2,274,192 + Dshi_2144 0.57 +0.5
2,274,202 + Dshi_2144 0.58 -1.6
2,274,207 + Dshi_2144 0.58 -0.3
2,274,321 + Dshi_2144 0.69 -0.5
2,274,342 - Dshi_2144 0.71 +0.8

Or see this region's nucleotide sequence