Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2073

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2072 and Dshi_2073 are separated by 444 nucleotidesDshi_2073 and Dshi_2074 are separated by 336 nucleotidesDshi_2074 and Dshi_2075 are separated by 99 nucleotides Dshi_2072: Dshi_2072 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 2,191,605 to 2,193,176 _2072 Dshi_2073: Dshi_2073 - hypothetical protein (RefSeq), at 2,193,621 to 2,194,550 _2073 Dshi_2074: Dshi_2074 - adenine phosphoribosyltransferase (RefSeq), at 2,194,887 to 2,195,426 _2074 Dshi_2075: Dshi_2075 - protein of unknown function DUF302 (RefSeq), at 2,195,526 to 2,195,978 _2075 Position (kb) 2193 2194 2195Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2192.656 kb on + strand, within Dshi_2072at 2192.680 kb on + strand, within Dshi_2072at 2192.763 kb on + strand, within Dshi_2072at 2192.830 kb on - strand, within Dshi_2072at 2192.843 kb on - strand, within Dshi_2072at 2192.861 kb on + strand, within Dshi_2072at 2192.861 kb on + strand, within Dshi_2072at 2193.030 kb on - strandat 2193.051 kb on - strandat 2193.051 kb on - strandat 2193.074 kb on + strandat 2193.117 kb on + strandat 2193.160 kb on - strandat 2193.217 kb on - strandat 2193.251 kb on - strandat 2193.264 kb on + strandat 2193.288 kb on - strandat 2193.306 kb on - strandat 2193.323 kb on + strandat 2193.366 kb on + strandat 2193.445 kb on - strandat 2193.516 kb on + strandat 2193.580 kb on - strandat 2193.607 kb on - strandat 2193.654 kb on - strandat 2193.762 kb on + strand, within Dshi_2073at 2193.852 kb on - strand, within Dshi_2073at 2193.924 kb on - strand, within Dshi_2073at 2193.995 kb on - strand, within Dshi_2073at 2194.080 kb on - strand, within Dshi_2073at 2194.234 kb on + strand, within Dshi_2073at 2194.273 kb on - strand, within Dshi_2073at 2194.330 kb on - strand, within Dshi_2073at 2194.531 kb on - strandat 2194.571 kb on - strandat 2194.575 kb on + strandat 2194.581 kb on + strandat 2194.589 kb on - strandat 2194.601 kb on - strandat 2194.603 kb on - strandat 2194.640 kb on + strandat 2194.650 kb on + strandat 2194.668 kb on - strandat 2194.720 kb on - strandat 2194.733 kb on + strandat 2194.807 kb on - strandat 2194.814 kb on + strandat 2194.881 kb on - strandat 2194.934 kb on - strandat 2195.012 kb on - strand, within Dshi_2074at 2195.082 kb on - strand, within Dshi_2074at 2195.176 kb on - strand, within Dshi_2074at 2195.314 kb on - strand, within Dshi_2074at 2195.327 kb on - strand, within Dshi_2074at 2195.380 kb on - strandat 2195.392 kb on - strandat 2195.407 kb on + strandat 2195.457 kb on + strandat 2195.535 kb on + strandat 2195.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,192,656 + Dshi_2072 0.67 -0.5
2,192,680 + Dshi_2072 0.68 +0.6
2,192,763 + Dshi_2072 0.74 +1.2
2,192,830 - Dshi_2072 0.78 -3.6
2,192,843 - Dshi_2072 0.79 +0.1
2,192,861 + Dshi_2072 0.80 +1.8
2,192,861 + Dshi_2072 0.80 -2.8
2,193,030 - +2.8
2,193,051 - +0.8
2,193,051 - +2.4
2,193,074 + -0.2
2,193,117 + -2.0
2,193,160 - -2.0
2,193,217 - -0.2
2,193,251 - +1.8
2,193,264 + -0.5
2,193,288 - -0.0
2,193,306 - -2.2
2,193,323 + +0.8
2,193,366 + +0.1
2,193,445 - -1.8
2,193,516 + -1.1
2,193,580 - -1.9
2,193,607 - -0.3
2,193,654 - -0.4
2,193,762 + Dshi_2073 0.15 -0.0
2,193,852 - Dshi_2073 0.25 -0.1
2,193,924 - Dshi_2073 0.33 +0.7
2,193,995 - Dshi_2073 0.40 +0.2
2,194,080 - Dshi_2073 0.49 -0.2
2,194,234 + Dshi_2073 0.66 -1.0
2,194,273 - Dshi_2073 0.70 +3.4
2,194,330 - Dshi_2073 0.76 +0.4
2,194,531 - +0.5
2,194,571 - -2.0
2,194,575 + +2.4
2,194,581 + -2.0
2,194,589 - +1.9
2,194,601 - +0.8
2,194,603 - +2.8
2,194,640 + +0.8
2,194,650 + +1.3
2,194,668 - -0.8
2,194,720 - -1.4
2,194,733 + -1.2
2,194,807 - -2.7
2,194,814 + -1.5
2,194,881 - +3.8
2,194,934 - -0.9
2,195,012 - Dshi_2074 0.23 -1.8
2,195,082 - Dshi_2074 0.36 +3.2
2,195,176 - Dshi_2074 0.54 +0.8
2,195,314 - Dshi_2074 0.79 +1.3
2,195,327 - Dshi_2074 0.81 +4.1
2,195,380 - -1.5
2,195,392 - -2.9
2,195,407 + +0.0
2,195,457 + -2.4
2,195,535 + +0.2
2,195,541 - +0.8

Or see this region's nucleotide sequence