Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2045

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2044 and Dshi_2045 are separated by 98 nucleotidesDshi_2045 and Dshi_5006 are separated by 3 nucleotides Dshi_2044: Dshi_2044 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,162,631 to 2,164,097 _2044 Dshi_2045: Dshi_2045 - thiamine pyrophosphate protein central region (RefSeq), at 2,164,196 to 2,165,974 _2045 Dshi_5006: Dshi_5006 - hypothetical protein (NCBI), at 2,165,978 to 2,167,135 _5006 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2163.251 kb on - strand, within Dshi_2044at 2163.273 kb on - strand, within Dshi_2044at 2163.315 kb on - strand, within Dshi_2044at 2163.315 kb on - strand, within Dshi_2044at 2163.564 kb on - strand, within Dshi_2044at 2163.599 kb on + strand, within Dshi_2044at 2163.661 kb on + strand, within Dshi_2044at 2163.671 kb on + strand, within Dshi_2044at 2163.799 kb on + strand, within Dshi_2044at 2163.799 kb on - strand, within Dshi_2044at 2163.805 kb on - strand, within Dshi_2044at 2163.807 kb on - strand, within Dshi_2044at 2163.844 kb on - strand, within Dshi_2044at 2163.924 kb on - strand, within Dshi_2044at 2163.952 kb on - strandat 2163.979 kb on + strandat 2164.072 kb on + strandat 2164.149 kb on + strandat 2164.157 kb on - strandat 2164.177 kb on + strandat 2164.177 kb on + strandat 2164.185 kb on - strandat 2166.217 kb on + strand, within Dshi_5006at 2166.217 kb on + strand, within Dshi_5006at 2166.339 kb on - strand, within Dshi_5006at 2166.794 kb on - strand, within Dshi_5006

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,163,251 - Dshi_2044 0.42 +0.7
2,163,273 - Dshi_2044 0.44 -1.6
2,163,315 - Dshi_2044 0.47 +2.3
2,163,315 - Dshi_2044 0.47 +0.3
2,163,564 - Dshi_2044 0.64 -0.2
2,163,599 + Dshi_2044 0.66 -2.4
2,163,661 + Dshi_2044 0.70 +0.8
2,163,671 + Dshi_2044 0.71 +1.2
2,163,799 + Dshi_2044 0.80 -0.2
2,163,799 - Dshi_2044 0.80 +0.2
2,163,805 - Dshi_2044 0.80 +3.3
2,163,807 - Dshi_2044 0.80 +1.6
2,163,844 - Dshi_2044 0.83 -0.2
2,163,924 - Dshi_2044 0.88 -0.8
2,163,952 - +1.5
2,163,979 + +3.8
2,164,072 + -0.1
2,164,149 + -1.6
2,164,157 - -0.6
2,164,177 + +0.6
2,164,177 + +1.0
2,164,185 - -1.4
2,166,217 + Dshi_5006 0.21 +0.2
2,166,217 + Dshi_5006 0.21 -1.8
2,166,339 - Dshi_5006 0.31 +0.8
2,166,794 - Dshi_5006 0.70 -3.7

Or see this region's nucleotide sequence