Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1961

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1960 and Dshi_1961 are separated by 14 nucleotidesDshi_1961 and Dshi_1962 are separated by 19 nucleotides Dshi_1960: Dshi_1960 - type I phosphodiesterase/nucleotide pyrophosphatase (RefSeq), at 2,056,060 to 2,057,664 _1960 Dshi_1961: Dshi_1961 - hypothetical protein (RefSeq), at 2,057,679 to 2,057,969 _1961 Dshi_1962: Dshi_1962 - Beta-ketoacyl synthase (RefSeq), at 2,057,989 to 2,062,884 _1962 Position (kb) 2057 2058Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2056.679 kb on - strand, within Dshi_1960at 2056.759 kb on + strand, within Dshi_1960at 2056.881 kb on + strand, within Dshi_1960at 2056.967 kb on - strand, within Dshi_1960at 2057.038 kb on - strand, within Dshi_1960at 2057.055 kb on + strand, within Dshi_1960at 2057.197 kb on - strand, within Dshi_1960at 2057.207 kb on + strand, within Dshi_1960at 2057.372 kb on - strand, within Dshi_1960at 2057.535 kb on - strandat 2057.588 kb on - strandat 2057.608 kb on + strandat 2057.865 kb on + strand, within Dshi_1961at 2057.873 kb on - strand, within Dshi_1961at 2057.887 kb on - strand, within Dshi_1961at 2057.955 kb on + strandat 2058.044 kb on + strandat 2058.063 kb on + strandat 2058.149 kb on - strandat 2058.153 kb on + strandat 2058.241 kb on - strandat 2058.241 kb on - strandat 2058.289 kb on - strandat 2058.363 kb on + strandat 2058.380 kb on + strandat 2058.405 kb on + strandat 2058.608 kb on + strand, within Dshi_1962at 2058.862 kb on - strand, within Dshi_1962

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,056,679 - Dshi_1960 0.39 -1.6
2,056,759 + Dshi_1960 0.44 -0.0
2,056,881 + Dshi_1960 0.51 -1.2
2,056,967 - Dshi_1960 0.57 +0.8
2,057,038 - Dshi_1960 0.61 -1.8
2,057,055 + Dshi_1960 0.62 -2.7
2,057,197 - Dshi_1960 0.71 +0.9
2,057,207 + Dshi_1960 0.71 +1.4
2,057,372 - Dshi_1960 0.82 +5.2
2,057,535 - +1.5
2,057,588 - +2.3
2,057,608 + +1.4
2,057,865 + Dshi_1961 0.64 -0.2
2,057,873 - Dshi_1961 0.67 -2.6
2,057,887 - Dshi_1961 0.71 -2.7
2,057,955 + -1.2
2,058,044 + +0.8
2,058,063 + +3.3
2,058,149 - -2.8
2,058,153 + +2.1
2,058,241 - -2.2
2,058,241 - -1.2
2,058,289 - -1.2
2,058,363 + -1.6
2,058,380 + -0.8
2,058,405 + -1.6
2,058,608 + Dshi_1962 0.13 +0.8
2,058,862 - Dshi_1962 0.18 +0.8

Or see this region's nucleotide sequence