Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1926 and Dshi_1927 are separated by 77 nucleotides Dshi_1927 and Dshi_1928 are separated by 57 nucleotides Dshi_1928 and xerC are separated by 3 nucleotides xerC and Dshi_1930 are separated by 19 nucleotides
Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753
_1926
Dshi_1927: Dshi_1927 - putative transaldolase (RefSeq), at 2,014,831 to 2,015,484
_1927
Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249
_1928
Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179
xerC
Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038
_1930
Position (kb)
2015
2016
2017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2014.740 kb on + strand at 2014.773 kb on + strand at 2014.773 kb on + strand at 2014.850 kb on + strand at 2014.985 kb on - strand, within Dshi_1927 at 2015.080 kb on - strand, within Dshi_1927 at 2015.088 kb on + strand, within Dshi_1927 at 2015.257 kb on - strand, within Dshi_1927 at 2015.308 kb on - strand, within Dshi_1927 at 2015.538 kb on + strand at 2015.546 kb on - strand at 2015.599 kb on + strand at 2015.695 kb on - strand, within Dshi_1928 at 2016.345 kb on + strand at 2017.121 kb on - strand at 2017.121 kb on - strand at 2017.160 kb on - strand at 2017.173 kb on + strand at 2017.181 kb on - strand at 2017.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 2,014,740 + +0.1 2,014,773 + +1.5 2,014,773 + +3.7 2,014,850 + -3.3 2,014,985 - Dshi_1927 0.24 +0.7 2,015,080 - Dshi_1927 0.38 +0.7 2,015,088 + Dshi_1927 0.39 -0.3 2,015,257 - Dshi_1927 0.65 -3.3 2,015,308 - Dshi_1927 0.73 +0.7 2,015,538 + +3.9 2,015,546 - -1.6 2,015,599 + -1.0 2,015,695 - Dshi_1928 0.22 -2.1 2,016,345 + +0.7 2,017,121 - +1.7 2,017,121 - -1.6 2,017,160 - -0.3 2,017,173 + +1.5 2,017,181 - +4.2 2,017,221 - -3.3
Or see this region's nucleotide sequence