Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1928

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1926 and Dshi_1927 are separated by 77 nucleotidesDshi_1927 and Dshi_1928 are separated by 57 nucleotidesDshi_1928 and xerC are separated by 3 nucleotidesxerC and Dshi_1930 are separated by 19 nucleotides Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753 _1926 Dshi_1927: Dshi_1927 - putative transaldolase (RefSeq), at 2,014,831 to 2,015,484 _1927 Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249 _1928 Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179 xerC Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038 _1930 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2014.740 kb on + strandat 2014.773 kb on + strandat 2014.773 kb on + strandat 2014.850 kb on + strandat 2014.985 kb on - strand, within Dshi_1927at 2015.080 kb on - strand, within Dshi_1927at 2015.088 kb on + strand, within Dshi_1927at 2015.257 kb on - strand, within Dshi_1927at 2015.308 kb on - strand, within Dshi_1927at 2015.538 kb on + strandat 2015.546 kb on - strandat 2015.599 kb on + strandat 2015.695 kb on - strand, within Dshi_1928at 2016.345 kb on + strandat 2017.121 kb on - strandat 2017.121 kb on - strandat 2017.160 kb on - strandat 2017.173 kb on + strandat 2017.181 kb on - strandat 2017.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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2,014,740 + +0.1
2,014,773 + +1.5
2,014,773 + +3.7
2,014,850 + -3.3
2,014,985 - Dshi_1927 0.24 +0.7
2,015,080 - Dshi_1927 0.38 +0.7
2,015,088 + Dshi_1927 0.39 -0.3
2,015,257 - Dshi_1927 0.65 -3.3
2,015,308 - Dshi_1927 0.73 +0.7
2,015,538 + +3.9
2,015,546 - -1.6
2,015,599 + -1.0
2,015,695 - Dshi_1928 0.22 -2.1
2,016,345 + +0.7
2,017,121 - +1.7
2,017,121 - -1.6
2,017,160 - -0.3
2,017,173 + +1.5
2,017,181 - +4.2
2,017,221 - -3.3

Or see this region's nucleotide sequence