Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1781

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1779 and Dshi_1780 overlap by 1 nucleotidesDshi_1780 and Dshi_1781 are separated by 57 nucleotidesDshi_1781 and Dshi_1782 are separated by 104 nucleotides Dshi_1779: Dshi_1779 - acetolactate synthase, large subunit, biosynthetic type (RefSeq), at 1,848,348 to 1,850,105 _1779 Dshi_1780: Dshi_1780 - hypothetical protein (RefSeq), at 1,850,105 to 1,850,416 _1780 Dshi_1781: Dshi_1781 - acetolactate synthase, small subunit (RefSeq), at 1,850,474 to 1,851,046 _1781 Dshi_1782: Dshi_1782 - Rieske (2Fe-2S) domain protein (RefSeq), at 1,851,151 to 1,852,302 _1782 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1850.151 kb on + strand, within Dshi_1780at 1850.270 kb on + strand, within Dshi_1780at 1850.272 kb on - strand, within Dshi_1780at 1850.410 kb on - strandat 1850.449 kb on + strandat 1850.555 kb on + strand, within Dshi_1781at 1850.569 kb on - strand, within Dshi_1781at 1850.722 kb on - strand, within Dshi_1781at 1850.771 kb on + strand, within Dshi_1781at 1850.779 kb on - strand, within Dshi_1781at 1850.794 kb on + strand, within Dshi_1781at 1850.861 kb on - strand, within Dshi_1781at 1851.253 kb on - strandat 1851.376 kb on + strand, within Dshi_1782at 1851.384 kb on - strand, within Dshi_1782at 1851.384 kb on - strand, within Dshi_1782at 1851.384 kb on - strand, within Dshi_1782at 1851.459 kb on + strand, within Dshi_1782at 1851.512 kb on + strand, within Dshi_1782at 1851.520 kb on - strand, within Dshi_1782at 1851.520 kb on - strand, within Dshi_1782at 1851.549 kb on - strand, within Dshi_1782at 1851.574 kb on - strand, within Dshi_1782at 1851.622 kb on - strand, within Dshi_1782at 1851.642 kb on - strand, within Dshi_1782at 1851.683 kb on + strand, within Dshi_1782at 1851.713 kb on - strand, within Dshi_1782at 1851.728 kb on + strand, within Dshi_1782at 1851.794 kb on + strand, within Dshi_1782at 1851.875 kb on + strand, within Dshi_1782at 1852.017 kb on + strand, within Dshi_1782

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
remove
1,850,151 + Dshi_1780 0.15 +3.6
1,850,270 + Dshi_1780 0.53 +1.2
1,850,272 - Dshi_1780 0.54 +1.5
1,850,410 - +0.7
1,850,449 + +1.9
1,850,555 + Dshi_1781 0.14 +0.2
1,850,569 - Dshi_1781 0.17 -0.3
1,850,722 - Dshi_1781 0.43 +1.4
1,850,771 + Dshi_1781 0.52 +0.7
1,850,779 - Dshi_1781 0.53 +1.1
1,850,794 + Dshi_1781 0.56 +2.7
1,850,861 - Dshi_1781 0.68 +2.7
1,851,253 - -0.3
1,851,376 + Dshi_1782 0.20 +0.5
1,851,384 - Dshi_1782 0.20 -0.7
1,851,384 - Dshi_1782 0.20 +0.7
1,851,384 - Dshi_1782 0.20 +0.5
1,851,459 + Dshi_1782 0.27 +0.7
1,851,512 + Dshi_1782 0.31 +0.7
1,851,520 - Dshi_1782 0.32 +1.0
1,851,520 - Dshi_1782 0.32 +4.5
1,851,549 - Dshi_1782 0.35 +0.5
1,851,574 - Dshi_1782 0.37 +0.7
1,851,622 - Dshi_1782 0.41 -1.8
1,851,642 - Dshi_1782 0.43 -0.3
1,851,683 + Dshi_1782 0.46 +2.1
1,851,713 - Dshi_1782 0.49 +2.1
1,851,728 + Dshi_1782 0.50 +1.5
1,851,794 + Dshi_1782 0.56 +0.7
1,851,875 + Dshi_1782 0.63 -0.3
1,852,017 + Dshi_1782 0.75 +0.3

Or see this region's nucleotide sequence