Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1728

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1727 and Dshi_1728 are separated by 88 nucleotidesDshi_1728 and Dshi_1729 are separated by 62 nucleotides Dshi_1727: Dshi_1727 - Sporulation domain protein (RefSeq), at 1,793,568 to 1,794,512 _1727 Dshi_1728: Dshi_1728 - arginyl-tRNA synthetase (RefSeq), at 1,794,601 to 1,796,346 _1728 Dshi_1729: Dshi_1729 - putative deoxyguanosinetriphosphate triphosphohydrolase (RefSeq), at 1,796,409 to 1,797,608 _1729 Position (kb) 1794 1795 1796 1797Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1793.931 kb on - strand, within Dshi_1727at 1793.966 kb on + strand, within Dshi_1727at 1794.063 kb on + strand, within Dshi_1727at 1796.422 kb on + strandat 1796.440 kb on + strandat 1796.457 kb on + strandat 1796.467 kb on + strandat 1796.631 kb on + strand, within Dshi_1729at 1796.770 kb on + strand, within Dshi_1729at 1796.948 kb on - strand, within Dshi_1729at 1797.077 kb on - strand, within Dshi_1729at 1797.130 kb on - strand, within Dshi_1729at 1797.151 kb on - strand, within Dshi_1729at 1797.260 kb on - strand, within Dshi_1729at 1797.307 kb on + strand, within Dshi_1729at 1797.317 kb on + strand, within Dshi_1729

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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1,793,931 - Dshi_1727 0.38 -2.2
1,793,966 + Dshi_1727 0.42 +0.8
1,794,063 + Dshi_1727 0.52 +1.8
1,796,422 + +1.1
1,796,440 + +0.8
1,796,457 + +1.2
1,796,467 + -0.0
1,796,631 + Dshi_1729 0.18 -1.3
1,796,770 + Dshi_1729 0.30 +1.6
1,796,948 - Dshi_1729 0.45 -0.5
1,797,077 - Dshi_1729 0.56 -0.6
1,797,130 - Dshi_1729 0.60 -2.9
1,797,151 - Dshi_1729 0.62 -1.5
1,797,260 - Dshi_1729 0.71 +0.8
1,797,307 + Dshi_1729 0.75 +0.8
1,797,317 + Dshi_1729 0.76 +0.1

Or see this region's nucleotide sequence