Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1685
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,754,586 | - | +0.1 | |||
1,754,587 | + | +2.0 | |||
1,754,629 | + | -0.8 | |||
1,754,723 | + | -1.3 | |||
1,754,760 | - | -2.4 | |||
1,754,878 | - | +0.6 | |||
1,754,930 | - | Dshi_1685 | 0.12 | -1.5 | |
1,754,986 | - | Dshi_1685 | 0.18 | -2.7 | |
1,754,992 | + | Dshi_1685 | 0.19 | -1.4 | |
1,755,001 | - | Dshi_1685 | 0.20 | -2.0 | |
1,755,001 | - | Dshi_1685 | 0.20 | -0.8 | |
1,755,054 | - | Dshi_1685 | 0.26 | -0.7 | |
1,755,115 | + | Dshi_1685 | 0.32 | +0.7 | |
1,755,138 | + | Dshi_1685 | 0.34 | -0.2 | |
1,755,255 | - | Dshi_1685 | 0.47 | -1.8 | |
1,755,421 | + | Dshi_1685 | 0.64 | -1.9 | |
1,755,461 | - | Dshi_1685 | 0.69 | -2.5 | |
1,755,498 | + | Dshi_1685 | 0.72 | -0.4 | |
1,755,728 | + | +4.0 | |||
1,755,856 | + | Dshi_1686 | 0.11 | -0.0 | |
1,755,925 | + | Dshi_1686 | 0.20 | +0.7 | |
1,756,017 | - | Dshi_1686 | 0.32 | +0.0 | |
1,756,161 | - | Dshi_1686 | 0.51 | -0.1 | |
1,756,182 | - | Dshi_1686 | 0.53 | +2.4 | |
1,756,323 | - | Dshi_1686 | 0.71 | -2.4 | |
1,756,323 | - | Dshi_1686 | 0.71 | -0.8 | |
1,756,334 | + | Dshi_1686 | 0.73 | -3.0 | |
1,756,352 | - | Dshi_1686 | 0.75 | -0.5 | |
1,756,492 | + | -2.5 | |||
1,756,539 | - | -1.9 | |||
1,756,723 | - | -3.9 |
Or see this region's nucleotide sequence