Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1665 and Dshi_1666 are separated by 128 nucleotides Dshi_1666 and Dshi_1667 are separated by 54 nucleotides Dshi_1667 and Dshi_1668 overlap by 4 nucleotides Dshi_1668 and Dshi_1669 are separated by 5 nucleotides
Dshi_1665: Dshi_1665 - nitrate ABC transporter, ATPase subunits C and D (RefSeq), at 1,731,213 to 1,732,898
_1665
Dshi_1666: Dshi_1666 - globin (RefSeq), at 1,733,027 to 1,733,473
_1666
Dshi_1667: Dshi_1667 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 1,733,528 to 1,735,960
_1667
Dshi_1668: Dshi_1668 - nitrite reductase (NAD(P)H), small subunit (RefSeq), at 1,735,957 to 1,736,298
_1668
Dshi_1669: Dshi_1669 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,736,304 to 1,738,925
_1669
Position (kb)
1733
1734
1735
1736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1732.613 kb on - strand, within Dshi_1665 at 1732.628 kb on + strand, within Dshi_1665 at 1732.687 kb on + strand, within Dshi_1665 at 1732.767 kb on + strand at 1732.874 kb on - strand at 1732.918 kb on + strand at 1732.921 kb on - strand at 1732.945 kb on + strand at 1733.021 kb on - strand at 1733.087 kb on - strand, within Dshi_1666 at 1733.092 kb on + strand, within Dshi_1666 at 1733.099 kb on + strand, within Dshi_1666 at 1733.102 kb on - strand, within Dshi_1666 at 1733.111 kb on - strand, within Dshi_1666 at 1733.131 kb on - strand, within Dshi_1666 at 1733.131 kb on - strand, within Dshi_1666 at 1733.200 kb on - strand, within Dshi_1666 at 1733.286 kb on + strand, within Dshi_1666 at 1733.347 kb on - strand, within Dshi_1666 at 1733.438 kb on - strand at 1733.469 kb on + strand at 1733.476 kb on + strand at 1733.558 kb on + strand at 1733.572 kb on - strand at 1733.609 kb on - strand at 1733.634 kb on - strand at 1733.665 kb on + strand at 1733.670 kb on + strand at 1733.670 kb on + strand at 1733.678 kb on - strand at 1733.754 kb on + strand at 1734.024 kb on + strand, within Dshi_1667 at 1734.037 kb on - strand, within Dshi_1667 at 1734.072 kb on + strand, within Dshi_1667 at 1734.107 kb on - strand, within Dshi_1667 at 1734.175 kb on + strand, within Dshi_1667 at 1734.482 kb on - strand, within Dshi_1667 at 1734.616 kb on + strand, within Dshi_1667 at 1734.616 kb on + strand, within Dshi_1667 at 1734.616 kb on + strand, within Dshi_1667 at 1734.666 kb on - strand, within Dshi_1667 at 1734.713 kb on + strand, within Dshi_1667 at 1734.718 kb on + strand, within Dshi_1667 at 1734.721 kb on + strand, within Dshi_1667 at 1734.739 kb on - strand, within Dshi_1667 at 1735.148 kb on + strand, within Dshi_1667 at 1735.209 kb on + strand, within Dshi_1667 at 1735.222 kb on + strand, within Dshi_1667 at 1735.474 kb on + strand, within Dshi_1667 at 1735.484 kb on - strand, within Dshi_1667 at 1735.484 kb on - strand, within Dshi_1667 at 1735.516 kb on + strand, within Dshi_1667 at 1735.516 kb on + strand, within Dshi_1667 at 1735.524 kb on - strand, within Dshi_1667 at 1735.526 kb on - strand, within Dshi_1667 at 1735.526 kb on - strand, within Dshi_1667 at 1735.555 kb on - strand, within Dshi_1667 at 1735.760 kb on - strand at 1735.835 kb on - strand at 1735.936 kb on + strand at 1736.028 kb on - strand, within Dshi_1668 at 1736.112 kb on - strand, within Dshi_1668 at 1736.148 kb on - strand, within Dshi_1668 at 1736.235 kb on + strand, within Dshi_1668 at 1736.254 kb on + strand, within Dshi_1668 at 1736.295 kb on - strand at 1736.310 kb on + strand at 1736.428 kb on - strand at 1736.433 kb on - strand at 1736.448 kb on - strand at 1736.457 kb on + strand at 1736.568 kb on - strand, within Dshi_1669 at 1736.845 kb on - strand, within Dshi_1669 at 1736.864 kb on - strand, within Dshi_1669 at 1736.896 kb on + strand, within Dshi_1669 at 1736.896 kb on + strand, within Dshi_1669
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 1,732,613 - Dshi_1665 0.83 +1.7 1,732,628 + Dshi_1665 0.84 -3.7 1,732,687 + Dshi_1665 0.87 +0.0 1,732,767 + -2.8 1,732,874 - +0.7 1,732,918 + +0.0 1,732,921 - +1.6 1,732,945 + +1.8 1,733,021 - +1.2 1,733,087 - Dshi_1666 0.13 +0.7 1,733,092 + Dshi_1666 0.15 +0.8 1,733,099 + Dshi_1666 0.16 -1.5 1,733,102 - Dshi_1666 0.17 -2.1 1,733,111 - Dshi_1666 0.19 +0.8 1,733,131 - Dshi_1666 0.23 +2.5 1,733,131 - Dshi_1666 0.23 +0.4 1,733,200 - Dshi_1666 0.39 +1.5 1,733,286 + Dshi_1666 0.58 +1.0 1,733,347 - Dshi_1666 0.72 -0.5 1,733,438 - +1.1 1,733,469 + +2.0 1,733,476 + +1.0 1,733,558 + +0.3 1,733,572 - +1.3 1,733,609 - -0.0 1,733,634 - +0.8 1,733,665 + +1.7 1,733,670 + +1.8 1,733,670 + +0.4 1,733,678 - -0.8 1,733,754 + -0.8 1,734,024 + Dshi_1667 0.20 -0.3 1,734,037 - Dshi_1667 0.21 +0.5 1,734,072 + Dshi_1667 0.22 -2.0 1,734,107 - Dshi_1667 0.24 +1.9 1,734,175 + Dshi_1667 0.27 +0.3 1,734,482 - Dshi_1667 0.39 +0.2 1,734,616 + Dshi_1667 0.45 +1.5 1,734,616 + Dshi_1667 0.45 +0.5 1,734,616 + Dshi_1667 0.45 -0.6 1,734,666 - Dshi_1667 0.47 -0.6 1,734,713 + Dshi_1667 0.49 -0.2 1,734,718 + Dshi_1667 0.49 +0.5 1,734,721 + Dshi_1667 0.49 +1.2 1,734,739 - Dshi_1667 0.50 +0.4 1,735,148 + Dshi_1667 0.67 +0.4 1,735,209 + Dshi_1667 0.69 +2.0 1,735,222 + Dshi_1667 0.70 -1.8 1,735,474 + Dshi_1667 0.80 -0.3 1,735,484 - Dshi_1667 0.80 +0.2 1,735,484 - Dshi_1667 0.80 -0.4 1,735,516 + Dshi_1667 0.82 -1.2 1,735,516 + Dshi_1667 0.82 +0.8 1,735,524 - Dshi_1667 0.82 +0.7 1,735,526 - Dshi_1667 0.82 +1.7 1,735,526 - Dshi_1667 0.82 -1.5 1,735,555 - Dshi_1667 0.83 +0.2 1,735,760 - -0.8 1,735,835 - -0.4 1,735,936 + -2.8 1,736,028 - Dshi_1668 0.21 +0.1 1,736,112 - Dshi_1668 0.45 +0.5 1,736,148 - Dshi_1668 0.56 -0.5 1,736,235 + Dshi_1668 0.81 -0.8 1,736,254 + Dshi_1668 0.87 +0.7 1,736,295 - -0.3 1,736,310 + -0.6 1,736,428 - +0.6 1,736,433 - +0.7 1,736,448 - -2.0 1,736,457 + -2.0 1,736,568 - Dshi_1669 0.10 -0.8 1,736,845 - Dshi_1669 0.21 -1.1 1,736,864 - Dshi_1669 0.21 -0.0 1,736,896 + Dshi_1669 0.23 -3.0 1,736,896 + Dshi_1669 0.23 -1.6
Or see this region's nucleotide sequence