Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1542
Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,603,755 | + | Dshi_1541 | 0.81 | -0.1 | |
| 1,603,976 | + | +0.5 | |||
| 1,604,069 | + | -1.2 | |||
| 1,604,197 | + | -0.7 | |||
| 1,604,272 | - | Dshi_1542 | 0.17 | +0.0 | |
| 1,604,282 | - | Dshi_1542 | 0.19 | -1.7 | |
| 1,604,332 | + | Dshi_1542 | 0.28 | -2.3 | |
| 1,604,488 | - | Dshi_1542 | 0.58 | +2.8 | |
| 1,604,645 | + | Dshi_1542 | 0.87 | -0.2 | |
| 1,604,697 | + | -0.0 | |||
| 1,604,707 | + | +0.7 | |||
| 1,604,722 | + | -1.2 | |||
| 1,604,722 | + | +1.3 | |||
| 1,604,762 | + | -0.6 | |||
| 1,604,915 | - | Dshi_1543 | 0.18 | +0.1 | |
| 1,605,086 | - | Dshi_1543 | 0.35 | +1.1 | |
| 1,605,108 | + | Dshi_1543 | 0.37 | +0.0 | |
| 1,605,116 | - | Dshi_1543 | 0.38 | +0.3 | |
| 1,605,116 | - | Dshi_1543 | 0.38 | +2.4 | |
| 1,605,148 | - | Dshi_1543 | 0.41 | -0.2 | |
| 1,605,505 | - | Dshi_1543 | 0.75 | +0.8 | |
| 1,605,670 | + | -0.3 | |||
| 1,605,695 | + | -2.7 |
Or see this region's nucleotide sequence