Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1474

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1472 and Dshi_1473 overlap by 4 nucleotidesDshi_1473 and Dshi_1474 overlap by 37 nucleotidesDshi_1474 and Dshi_1475 are separated by 39 nucleotides Dshi_1472: Dshi_1472 - phospholipid/glycerol acyltransferase (RefSeq), at 1,526,145 to 1,526,921 _1472 Dshi_1473: Dshi_1473 - phospholipid/glycerol acyltransferase (RefSeq), at 1,526,918 to 1,527,763 _1473 Dshi_1474: Dshi_1474 - glutamyl-tRNA synthetase class Ic (RefSeq), at 1,527,727 to 1,528,590 _1474 Dshi_1475: Dshi_1475 - gid protein (RefSeq), at 1,528,630 to 1,529,985 _1475 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1526.735 kb on + strand, within Dshi_1472at 1526.782 kb on - strand, within Dshi_1472at 1526.861 kb on + strandat 1526.878 kb on + strandat 1526.886 kb on - strandat 1526.957 kb on - strandat 1527.169 kb on + strand, within Dshi_1473at 1527.517 kb on + strand, within Dshi_1473at 1527.684 kb on + strandat 1527.917 kb on + strand, within Dshi_1474at 1527.950 kb on - strand, within Dshi_1474at 1528.070 kb on + strand, within Dshi_1474at 1528.411 kb on + strand, within Dshi_1474at 1528.419 kb on - strand, within Dshi_1474at 1528.419 kb on - strand, within Dshi_1474at 1528.927 kb on - strand, within Dshi_1475at 1529.197 kb on - strand, within Dshi_1475at 1529.401 kb on - strand, within Dshi_1475at 1529.417 kb on + strand, within Dshi_1475

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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1,526,735 + Dshi_1472 0.76 +2.0
1,526,782 - Dshi_1472 0.82 +1.8
1,526,861 + -0.2
1,526,878 + +1.8
1,526,886 - -2.9
1,526,957 - +1.0
1,527,169 + Dshi_1473 0.30 +0.3
1,527,517 + Dshi_1473 0.71 +1.9
1,527,684 + +0.9
1,527,917 + Dshi_1474 0.22 +2.2
1,527,950 - Dshi_1474 0.26 +0.9
1,528,070 + Dshi_1474 0.40 -0.3
1,528,411 + Dshi_1474 0.79 +0.5
1,528,419 - Dshi_1474 0.80 +3.5
1,528,419 - Dshi_1474 0.80 +1.5
1,528,927 - Dshi_1475 0.22 -1.7
1,529,197 - Dshi_1475 0.42 +0.8
1,529,401 - Dshi_1475 0.57 -2.0
1,529,417 + Dshi_1475 0.58 +2.2

Or see this region's nucleotide sequence