Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1452

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1450 and Dshi_1451 overlap by 4 nucleotidesDshi_1451 and Dshi_1452 overlap by 4 nucleotidesDshi_1452 and Dshi_1453 are separated by 21 nucleotides Dshi_1450: Dshi_1450 - NnrS family protein (RefSeq), at 1,509,057 to 1,510,334 _1450 Dshi_1451: Dshi_1451 - ABC transporter related (RefSeq), at 1,510,331 to 1,511,080 _1451 Dshi_1452: Dshi_1452 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,511,077 to 1,511,940 _1452 Dshi_1453: Dshi_1453 - putative sulfonate/nitrate transport system substrate-binding protein (RefSeq), at 1,511,962 to 1,512,945 _1453 Position (kb) 1511 1512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1510.096 kb on + strand, within Dshi_1450at 1510.288 kb on + strandat 1510.474 kb on + strand, within Dshi_1451at 1510.518 kb on + strand, within Dshi_1451at 1510.593 kb on - strand, within Dshi_1451at 1510.594 kb on - strand, within Dshi_1451at 1510.598 kb on + strand, within Dshi_1451at 1510.623 kb on + strand, within Dshi_1451at 1510.631 kb on - strand, within Dshi_1451at 1510.887 kb on + strand, within Dshi_1451at 1511.149 kb on + strandat 1511.170 kb on - strand, within Dshi_1452at 1511.317 kb on - strand, within Dshi_1452at 1511.513 kb on + strand, within Dshi_1452at 1511.605 kb on + strand, within Dshi_1452at 1511.806 kb on - strand, within Dshi_1452at 1511.831 kb on - strand, within Dshi_1452at 1511.891 kb on + strandat 1511.937 kb on + strandat 1511.955 kb on - strandat 1512.149 kb on + strand, within Dshi_1453at 1512.250 kb on - strand, within Dshi_1453at 1512.393 kb on + strand, within Dshi_1453at 1512.456 kb on - strand, within Dshi_1453at 1512.607 kb on - strand, within Dshi_1453at 1512.679 kb on - strand, within Dshi_1453at 1512.722 kb on - strand, within Dshi_1453at 1512.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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1,510,096 + Dshi_1450 0.81 +1.9
1,510,288 + +1.9
1,510,474 + Dshi_1451 0.19 +0.9
1,510,518 + Dshi_1451 0.25 +0.2
1,510,593 - Dshi_1451 0.35 -1.7
1,510,594 - Dshi_1451 0.35 +1.5
1,510,598 + Dshi_1451 0.36 +0.2
1,510,623 + Dshi_1451 0.39 +0.5
1,510,631 - Dshi_1451 0.40 -0.7
1,510,887 + Dshi_1451 0.74 +0.2
1,511,149 + +3.7
1,511,170 - Dshi_1452 0.11 +2.9
1,511,317 - Dshi_1452 0.28 +0.9
1,511,513 + Dshi_1452 0.50 -1.1
1,511,605 + Dshi_1452 0.61 -1.5
1,511,806 - Dshi_1452 0.84 -0.1
1,511,831 - Dshi_1452 0.87 -2.6
1,511,891 + +0.9
1,511,937 + +2.5
1,511,955 - -0.7
1,512,149 + Dshi_1453 0.19 +3.1
1,512,250 - Dshi_1453 0.29 -1.1
1,512,393 + Dshi_1453 0.44 -1.5
1,512,456 - Dshi_1453 0.50 +4.5
1,512,607 - Dshi_1453 0.66 -1.7
1,512,679 - Dshi_1453 0.73 -2.8
1,512,722 - Dshi_1453 0.77 +3.2
1,512,882 + +3.7

Or see this region's nucleotide sequence