Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1254 and Dshi_1255 overlap by 4 nucleotides Dshi_1255 and Dshi_1256 are separated by 67 nucleotides Dshi_1256 and Dshi_1257 are separated by 10 nucleotides
Dshi_1254: Dshi_1254 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,300,949 to 1,301,971
_1254
Dshi_1255: Dshi_1255 - major facilitator superfamily MFS_1 (RefSeq), at 1,301,968 to 1,303,236
_1255
Dshi_1256: Dshi_1256 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,303,304 to 1,303,924
_1256
Dshi_1257: Dshi_1257 - hypothetical protein (RefSeq), at 1,303,935 to 1,304,216
_1257
Position (kb)
1301
1302
1303
1304 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1300.975 kb on - strand at 1301.032 kb on + strand at 1301.144 kb on - strand, within Dshi_1254 at 1301.180 kb on - strand, within Dshi_1254 at 1301.185 kb on + strand, within Dshi_1254 at 1301.185 kb on + strand, within Dshi_1254 at 1301.193 kb on - strand, within Dshi_1254 at 1301.229 kb on + strand, within Dshi_1254 at 1301.236 kb on - strand, within Dshi_1254 at 1301.300 kb on + strand, within Dshi_1254 at 1301.467 kb on + strand, within Dshi_1254 at 1301.620 kb on + strand, within Dshi_1254 at 1301.890 kb on + strand at 1301.892 kb on - strand at 1302.206 kb on - strand, within Dshi_1255 at 1302.247 kb on - strand, within Dshi_1255 at 1302.319 kb on + strand, within Dshi_1255 at 1302.436 kb on + strand, within Dshi_1255 at 1302.531 kb on + strand, within Dshi_1255 at 1302.631 kb on - strand, within Dshi_1255 at 1302.660 kb on + strand, within Dshi_1255 at 1302.767 kb on - strand, within Dshi_1255 at 1302.793 kb on + strand, within Dshi_1255 at 1302.793 kb on + strand, within Dshi_1255 at 1302.793 kb on + strand, within Dshi_1255 at 1302.801 kb on - strand, within Dshi_1255 at 1302.864 kb on + strand, within Dshi_1255 at 1302.888 kb on + strand, within Dshi_1255 at 1302.896 kb on - strand, within Dshi_1255 at 1303.053 kb on + strand, within Dshi_1255 at 1303.272 kb on + strand at 1303.303 kb on - strand at 1303.431 kb on - strand, within Dshi_1256 at 1303.535 kb on + strand, within Dshi_1256 at 1303.543 kb on - strand, within Dshi_1256 at 1303.589 kb on - strand, within Dshi_1256 at 1303.589 kb on - strand, within Dshi_1256 at 1303.725 kb on + strand, within Dshi_1256 at 1303.736 kb on + strand, within Dshi_1256 at 1303.744 kb on - strand, within Dshi_1256 at 1303.744 kb on - strand, within Dshi_1256 at 1303.746 kb on + strand, within Dshi_1256 at 1303.853 kb on - strand, within Dshi_1256 at 1303.854 kb on + strand, within Dshi_1256 at 1303.872 kb on + strand at 1303.882 kb on + strand at 1303.890 kb on - strand at 1303.892 kb on + strand at 1303.906 kb on + strand at 1303.921 kb on - strand at 1303.950 kb on - strand at 1303.982 kb on - strand, within Dshi_1257 at 1304.018 kb on - strand, within Dshi_1257 at 1304.018 kb on - strand, within Dshi_1257 at 1304.077 kb on + strand, within Dshi_1257 at 1304.077 kb on + strand, within Dshi_1257
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 1,300,975 - -0.4 1,301,032 + -2.2 1,301,144 - Dshi_1254 0.19 -0.9 1,301,180 - Dshi_1254 0.23 -1.7 1,301,185 + Dshi_1254 0.23 -2.7 1,301,185 + Dshi_1254 0.23 +0.4 1,301,193 - Dshi_1254 0.24 -0.3 1,301,229 + Dshi_1254 0.27 +0.3 1,301,236 - Dshi_1254 0.28 -3.9 1,301,300 + Dshi_1254 0.34 -0.7 1,301,467 + Dshi_1254 0.51 +1.0 1,301,620 + Dshi_1254 0.66 -0.7 1,301,890 + +0.6 1,301,892 - -0.4 1,302,206 - Dshi_1255 0.19 +0.8 1,302,247 - Dshi_1255 0.22 -0.0 1,302,319 + Dshi_1255 0.28 +2.1 1,302,436 + Dshi_1255 0.37 -4.3 1,302,531 + Dshi_1255 0.44 -1.3 1,302,631 - Dshi_1255 0.52 +0.8 1,302,660 + Dshi_1255 0.55 -1.7 1,302,767 - Dshi_1255 0.63 +0.4 1,302,793 + Dshi_1255 0.65 +4.8 1,302,793 + Dshi_1255 0.65 +2.0 1,302,793 + Dshi_1255 0.65 +0.8 1,302,801 - Dshi_1255 0.66 -1.4 1,302,864 + Dshi_1255 0.71 -2.0 1,302,888 + Dshi_1255 0.72 -2.7 1,302,896 - Dshi_1255 0.73 -2.5 1,303,053 + Dshi_1255 0.86 +1.6 1,303,272 + +1.3 1,303,303 - +0.7 1,303,431 - Dshi_1256 0.20 +3.6 1,303,535 + Dshi_1256 0.37 +3.0 1,303,543 - Dshi_1256 0.38 +2.8 1,303,589 - Dshi_1256 0.46 +0.6 1,303,589 - Dshi_1256 0.46 -1.6 1,303,725 + Dshi_1256 0.68 +0.4 1,303,736 + Dshi_1256 0.70 +1.5 1,303,744 - Dshi_1256 0.71 -3.8 1,303,744 - Dshi_1256 0.71 +0.1 1,303,746 + Dshi_1256 0.71 -2.0 1,303,853 - Dshi_1256 0.88 -1.6 1,303,854 + Dshi_1256 0.89 +0.6 1,303,872 + -0.3 1,303,882 + -0.2 1,303,890 - +4.4 1,303,892 + +0.8 1,303,906 + +0.8 1,303,921 - -0.4 1,303,950 - -0.3 1,303,982 - Dshi_1257 0.17 +0.1 1,304,018 - Dshi_1257 0.29 -1.2 1,304,018 - Dshi_1257 0.29 +2.6 1,304,077 + Dshi_1257 0.50 -0.5 1,304,077 + Dshi_1257 0.50 -3.2
Or see this region's nucleotide sequence