Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1200

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1198 and Dshi_1199 are separated by 152 nucleotidesDshi_1199 and Dshi_1200 are separated by 2 nucleotidesDshi_1200 and Dshi_1201 are separated by 88 nucleotidesDshi_1201 and Dshi_R0025 are separated by 51 nucleotidesDshi_R0025 and Dshi_1202 are separated by 18 nucleotides Dshi_1198: Dshi_1198 - beta-lactamase (RefSeq), at 1,238,964 to 1,239,965 _1198 Dshi_1199: Dshi_1199 - Inositol-phosphate phosphatase (RefSeq), at 1,240,118 to 1,240,912 _1199 Dshi_1200: Dshi_1200 - Rhomboid family protein (RefSeq), at 1,240,915 to 1,241,691 _1200 Dshi_1201: Dshi_1201 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,241,780 to 1,242,331 _1201 Dshi_R0025: Dshi_R0025 - tRNA-Leu (RefSeq), at 1,242,383 to 1,242,468 _R0025 Dshi_1202: Dshi_1202 - heat shock protein DnaJ domain protein (RefSeq), at 1,242,487 to 1,243,116 _1202 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1240.014 kb on - strandat 1240.025 kb on - strandat 1240.956 kb on + strandat 1241.158 kb on + strand, within Dshi_1200at 1241.680 kb on + strandat 1241.691 kb on - strandat 1241.700 kb on + strandat 1241.705 kb on + strandat 1242.039 kb on + strand, within Dshi_1201at 1242.098 kb on - strand, within Dshi_1201at 1242.214 kb on - strand, within Dshi_1201at 1242.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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1,240,014 - +0.4
1,240,025 - -0.8
1,240,956 + +0.9
1,241,158 + Dshi_1200 0.31 +0.9
1,241,680 + +1.9
1,241,691 - -1.2
1,241,700 + -0.9
1,241,705 + -0.2
1,242,039 + Dshi_1201 0.47 +0.8
1,242,098 - Dshi_1201 0.58 +2.8
1,242,214 - Dshi_1201 0.79 +0.8
1,242,481 - -4.0

Or see this region's nucleotide sequence