Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1194 and Dshi_1195 are separated by 96 nucleotides Dshi_1195 and Dshi_1196 are separated by 472 nucleotides
Dshi_1194: Dshi_1194 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) , at 1,231,911 to 1,234,142
_1194
Dshi_1195: Dshi_1195 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data) , at 1,234,239 to 1,235,231
_1195
Dshi_1196: Dshi_1196 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,235,704 to 1,237,050
_1196
Position (kb)
1234
1235
1236 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1233.284 kb on + strand, within Dshi_1194 at 1233.304 kb on + strand, within Dshi_1194 at 1233.304 kb on + strand, within Dshi_1194 at 1233.539 kb on - strand, within Dshi_1194 at 1233.725 kb on - strand, within Dshi_1194 at 1234.190 kb on - strand at 1234.442 kb on + strand, within Dshi_1195 at 1234.769 kb on - strand, within Dshi_1195 at 1235.004 kb on + strand, within Dshi_1195 at 1235.288 kb on - strand at 1235.493 kb on + strand at 1235.501 kb on - strand at 1235.812 kb on + strand at 1235.820 kb on - strand at 1235.835 kb on - strand at 1235.905 kb on - strand, within Dshi_1196 at 1235.925 kb on + strand, within Dshi_1196 at 1236.013 kb on - strand, within Dshi_1196 at 1236.094 kb on + strand, within Dshi_1196
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 1,233,284 + Dshi_1194 0.62 -0.3 1,233,304 + Dshi_1194 0.62 +2.5 1,233,304 + Dshi_1194 0.62 +0.7 1,233,539 - Dshi_1194 0.73 +0.3 1,233,725 - Dshi_1194 0.81 -2.3 1,234,190 - -3.9 1,234,442 + Dshi_1195 0.20 -1.3 1,234,769 - Dshi_1195 0.53 -0.2 1,235,004 + Dshi_1195 0.77 -3.8 1,235,288 - +0.5 1,235,493 + +0.7 1,235,501 - -1.3 1,235,812 + +1.0 1,235,820 - +1.9 1,235,835 - +1.6 1,235,905 - Dshi_1196 0.15 +4.5 1,235,925 + Dshi_1196 0.16 +2.5 1,236,013 - Dshi_1196 0.23 -0.0 1,236,094 + Dshi_1196 0.29 +0.8
Or see this region's nucleotide sequence