Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1115 and Dshi_1116 are separated by 139 nucleotides Dshi_1116 and Dshi_1117 are separated by 81 nucleotides Dshi_1117 and Dshi_1118 overlap by 4 nucleotides Dshi_1118 and Dshi_1119 are separated by 23 nucleotides
Dshi_1115: Dshi_1115 - ATP-dependent metalloprotease FtsH (RefSeq), at 1,139,764 to 1,141,680
_1115
Dshi_1116: Dshi_1116 - hypothetical protein (RefSeq), at 1,141,820 to 1,142,431
_1116
Dshi_1117: Dshi_1117 - thioesterase superfamily protein (RefSeq), at 1,142,513 to 1,142,929
_1117
Dshi_1118: Dshi_1118 - hypothetical protein (RefSeq), at 1,142,926 to 1,143,639
_1118
Dshi_1119: Dshi_1119 - DNA damage response helicase, ligase-associated <small>(from data)</small>, at 1,143,663 to 1,146,086
_1119
Position (kb) 1142
1143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1141.632 kb on - strand at 1141.803 kb on + strand at 1142.086 kb on - strand, within Dshi_1116 at 1142.239 kb on + strand, within Dshi_1116 at 1142.295 kb on - strand, within Dshi_1116 at 1142.511 kb on + strand at 1142.770 kb on - strand, within Dshi_1117 at 1142.770 kb on - strand, within Dshi_1117
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 1,141,632 - -2.4 1,141,803 + -4.3 1,142,086 - Dshi_1116 0.43 -1.7 1,142,239 + Dshi_1116 0.68 -1.3 1,142,295 - Dshi_1116 0.78 -1.2 1,142,511 + +3.1 1,142,770 - Dshi_1117 0.62 +0.7 1,142,770 - Dshi_1117 0.62 -0.5
Or see this region's nucleotide sequence