Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1116

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1115 and Dshi_1116 are separated by 139 nucleotidesDshi_1116 and Dshi_1117 are separated by 81 nucleotidesDshi_1117 and Dshi_1118 overlap by 4 nucleotides Dshi_1115: Dshi_1115 - ATP-dependent metalloprotease FtsH (RefSeq), at 1,139,764 to 1,141,680 _1115 Dshi_1116: Dshi_1116 - hypothetical protein (RefSeq), at 1,141,820 to 1,142,431 _1116 Dshi_1117: Dshi_1117 - thioesterase superfamily protein (RefSeq), at 1,142,513 to 1,142,929 _1117 Dshi_1118: Dshi_1118 - hypothetical protein (RefSeq), at 1,142,926 to 1,143,639 _1118 Position (kb) 1141 1142 1143Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1141.632 kb on - strandat 1141.803 kb on + strandat 1142.086 kb on - strand, within Dshi_1116at 1142.239 kb on + strand, within Dshi_1116at 1142.295 kb on - strand, within Dshi_1116at 1142.511 kb on + strandat 1142.770 kb on - strand, within Dshi_1117at 1142.770 kb on - strand, within Dshi_1117

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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1,141,632 - -2.4
1,141,803 + -4.3
1,142,086 - Dshi_1116 0.43 -1.7
1,142,239 + Dshi_1116 0.68 -1.3
1,142,295 - Dshi_1116 0.78 -1.2
1,142,511 + +3.1
1,142,770 - Dshi_1117 0.62 +0.7
1,142,770 - Dshi_1117 0.62 -0.5

Or see this region's nucleotide sequence