Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0994 and Dshi_0995 overlap by 4 nucleotides Dshi_0995 and Dshi_0996 are separated by 100 nucleotides
Dshi_0994: Dshi_0994 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 1,023,150 to 1,025,069
_0994
Dshi_0995: Dshi_0995 - transcriptional regulator, LysR family (RefSeq), at 1,025,066 to 1,025,971
_0995
Dshi_0996: Dshi_0996 - NADH/Ubiquinone/plastoquinone (complex I) (RefSeq), at 1,026,072 to 1,027,577
_0996
Position (kb)
1025
1026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1024.117 kb on - strand, within Dshi_0994 at 1024.228 kb on + strand, within Dshi_0994 at 1024.233 kb on + strand, within Dshi_0994 at 1024.246 kb on - strand, within Dshi_0994 at 1024.362 kb on + strand, within Dshi_0994 at 1024.455 kb on - strand, within Dshi_0994 at 1024.461 kb on - strand, within Dshi_0994 at 1024.511 kb on + strand, within Dshi_0994 at 1024.672 kb on - strand, within Dshi_0994 at 1024.721 kb on + strand, within Dshi_0994 at 1024.729 kb on - strand, within Dshi_0994 at 1024.785 kb on + strand, within Dshi_0994 at 1024.793 kb on - strand, within Dshi_0994 at 1024.824 kb on - strand, within Dshi_0994 at 1024.897 kb on - strand at 1024.920 kb on + strand at 1024.957 kb on - strand at 1024.987 kb on - strand at 1025.091 kb on + strand at 1025.263 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.335 kb on - strand, within Dshi_0995 at 1025.418 kb on + strand, within Dshi_0995 at 1025.459 kb on - strand, within Dshi_0995 at 1025.629 kb on - strand, within Dshi_0995 at 1025.770 kb on + strand, within Dshi_0995 at 1025.818 kb on - strand, within Dshi_0995 at 1025.824 kb on + strand, within Dshi_0995 at 1025.855 kb on + strand, within Dshi_0995 at 1025.947 kb on + strand at 1026.080 kb on + strand at 1026.150 kb on - strand at 1026.393 kb on + strand, within Dshi_0996 at 1026.393 kb on + strand, within Dshi_0996 at 1026.436 kb on - strand, within Dshi_0996 at 1026.460 kb on + strand, within Dshi_0996 at 1026.576 kb on - strand, within Dshi_0996 at 1026.723 kb on - strand, within Dshi_0996 at 1026.733 kb on + strand, within Dshi_0996 at 1026.744 kb on + strand, within Dshi_0996 at 1026.884 kb on - strand, within Dshi_0996 at 1026.884 kb on - strand, within Dshi_0996
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 1,024,117 - Dshi_0994 0.50 +2.8 1,024,228 + Dshi_0994 0.56 +0.8 1,024,233 + Dshi_0994 0.56 +0.8 1,024,246 - Dshi_0994 0.57 -1.6 1,024,362 + Dshi_0994 0.63 +0.8 1,024,455 - Dshi_0994 0.68 +0.3 1,024,461 - Dshi_0994 0.68 +0.8 1,024,511 + Dshi_0994 0.71 +0.8 1,024,672 - Dshi_0994 0.79 +0.2 1,024,721 + Dshi_0994 0.82 +0.3 1,024,729 - Dshi_0994 0.82 -0.9 1,024,785 + Dshi_0994 0.85 -2.4 1,024,793 - Dshi_0994 0.86 +1.8 1,024,824 - Dshi_0994 0.87 +0.2 1,024,897 - -2.2 1,024,920 + -0.8 1,024,957 - -0.4 1,024,987 - -1.2 1,025,091 + +0.8 1,025,263 - Dshi_0995 0.22 -1.8 1,025,335 - Dshi_0995 0.30 +2.1 1,025,335 - Dshi_0995 0.30 -0.8 1,025,335 - Dshi_0995 0.30 +0.0 1,025,418 + Dshi_0995 0.39 +1.8 1,025,459 - Dshi_0995 0.43 +3.6 1,025,629 - Dshi_0995 0.62 -0.2 1,025,770 + Dshi_0995 0.78 -0.2 1,025,818 - Dshi_0995 0.83 +1.4 1,025,824 + Dshi_0995 0.84 +0.8 1,025,855 + Dshi_0995 0.87 +1.8 1,025,947 + +1.8 1,026,080 + +2.9 1,026,150 - +1.8 1,026,393 + Dshi_0996 0.21 -0.7 1,026,393 + Dshi_0996 0.21 -0.6 1,026,436 - Dshi_0996 0.24 +0.8 1,026,460 + Dshi_0996 0.26 +0.8 1,026,576 - Dshi_0996 0.33 +2.3 1,026,723 - Dshi_0996 0.43 -0.2 1,026,733 + Dshi_0996 0.44 -0.5 1,026,744 + Dshi_0996 0.45 -2.9 1,026,884 - Dshi_0996 0.54 -2.9 1,026,884 - Dshi_0996 0.54 -0.8
Or see this region's nucleotide sequence