Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0971 and Dshi_0972 are separated by 12 nucleotides Dshi_0972 and Dshi_0973 are separated by 10 nucleotides Dshi_0973 and Dshi_0974 are separated by 113 nucleotides
Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442
_0971
Dshi_0972: Dshi_0972 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 993,455 to 994,285
_0972
Dshi_0973: Dshi_0973 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 994,296 to 995,162
_0973
Dshi_0974: Dshi_0974 - extracellular solute-binding protein family 1 (RefSeq), at 995,276 to 996,583
_0974
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 993.324 kb on - strand, within Dshi_0971 at 993.373 kb on + strand at 993.408 kb on - strand at 993.539 kb on + strand, within Dshi_0972 at 993.547 kb on - strand, within Dshi_0972 at 993.547 kb on - strand, within Dshi_0972 at 993.549 kb on + strand, within Dshi_0972 at 993.557 kb on - strand, within Dshi_0972 at 993.574 kb on - strand, within Dshi_0972 at 993.581 kb on - strand, within Dshi_0972 at 993.634 kb on + strand, within Dshi_0972 at 993.695 kb on - strand, within Dshi_0972 at 993.699 kb on + strand, within Dshi_0972 at 993.886 kb on + strand, within Dshi_0972 at 993.909 kb on + strand, within Dshi_0972 at 993.917 kb on - strand, within Dshi_0972 at 994.017 kb on + strand, within Dshi_0972 at 994.115 kb on - strand, within Dshi_0972 at 994.181 kb on - strand, within Dshi_0972 at 994.181 kb on - strand, within Dshi_0972 at 994.222 kb on + strand at 994.230 kb on + strand at 994.230 kb on + strand at 994.235 kb on + strand at 994.243 kb on - strand at 994.243 kb on - strand at 994.253 kb on - strand at 994.384 kb on - strand, within Dshi_0973 at 994.447 kb on - strand, within Dshi_0973 at 994.544 kb on - strand, within Dshi_0973 at 994.600 kb on + strand, within Dshi_0973 at 994.641 kb on - strand, within Dshi_0973 at 994.679 kb on + strand, within Dshi_0973 at 994.689 kb on + strand, within Dshi_0973 at 994.740 kb on - strand, within Dshi_0973 at 994.853 kb on - strand, within Dshi_0973 at 994.915 kb on - strand, within Dshi_0973 at 994.941 kb on + strand, within Dshi_0973 at 994.954 kb on - strand, within Dshi_0973 at 995.005 kb on + strand, within Dshi_0973 at 995.037 kb on - strand, within Dshi_0973 at 995.173 kb on - strand at 995.185 kb on - strand at 995.317 kb on - strand at 995.323 kb on - strand at 995.323 kb on - strand at 995.426 kb on - strand, within Dshi_0974 at 995.578 kb on - strand, within Dshi_0974 at 995.584 kb on - strand, within Dshi_0974 at 995.584 kb on - strand, within Dshi_0974 at 995.686 kb on + strand, within Dshi_0974 at 995.820 kb on + strand, within Dshi_0974 at 995.828 kb on - strand, within Dshi_0974 at 995.851 kb on + strand, within Dshi_0974 at 995.952 kb on + strand, within Dshi_0974 at 995.970 kb on - strand, within Dshi_0974 at 995.977 kb on + strand, within Dshi_0974 at 995.977 kb on + strand, within Dshi_0974
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 993,324 - Dshi_0971 0.88 +1.3 993,373 + -2.5 993,408 - -0.3 993,539 + Dshi_0972 0.10 +0.8 993,547 - Dshi_0972 0.11 +1.2 993,547 - Dshi_0972 0.11 -2.5 993,549 + Dshi_0972 0.11 +1.3 993,557 - Dshi_0972 0.12 +1.2 993,574 - Dshi_0972 0.14 +0.6 993,581 - Dshi_0972 0.15 -1.4 993,634 + Dshi_0972 0.22 -3.5 993,695 - Dshi_0972 0.29 -2.9 993,699 + Dshi_0972 0.29 +1.4 993,886 + Dshi_0972 0.52 -1.3 993,909 + Dshi_0972 0.55 -0.5 993,917 - Dshi_0972 0.56 +0.3 994,017 + Dshi_0972 0.68 +0.6 994,115 - Dshi_0972 0.79 +0.4 994,181 - Dshi_0972 0.87 +0.1 994,181 - Dshi_0972 0.87 -0.2 994,222 + +0.7 994,230 + +0.5 994,230 + +0.0 994,235 + -0.5 994,243 - +1.3 994,243 - +0.5 994,253 - +1.8 994,384 - Dshi_0973 0.10 +0.8 994,447 - Dshi_0973 0.17 -0.4 994,544 - Dshi_0973 0.29 +2.0 994,600 + Dshi_0973 0.35 -0.0 994,641 - Dshi_0973 0.40 +0.6 994,679 + Dshi_0973 0.44 -0.5 994,689 + Dshi_0973 0.45 -1.2 994,740 - Dshi_0973 0.51 -0.5 994,853 - Dshi_0973 0.64 +1.4 994,915 - Dshi_0973 0.71 +0.0 994,941 + Dshi_0973 0.74 -0.8 994,954 - Dshi_0973 0.76 -0.4 995,005 + Dshi_0973 0.82 +0.9 995,037 - Dshi_0973 0.85 +0.6 995,173 - -0.0 995,185 - -1.0 995,317 - +0.6 995,323 - -0.5 995,323 - +0.6 995,426 - Dshi_0974 0.11 -0.6 995,578 - Dshi_0974 0.23 -1.8 995,584 - Dshi_0974 0.24 -0.7 995,584 - Dshi_0974 0.24 -1.0 995,686 + Dshi_0974 0.31 -0.6 995,820 + Dshi_0974 0.42 +0.2 995,828 - Dshi_0974 0.42 -0.8 995,851 + Dshi_0974 0.44 -1.8 995,952 + Dshi_0974 0.52 +0.0 995,970 - Dshi_0974 0.53 -0.1 995,977 + Dshi_0974 0.54 -3.1 995,977 + Dshi_0974 0.54 +1.4
Or see this region's nucleotide sequence