Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0967 and Dshi_0968 are separated by 96 nucleotides Dshi_0968 and Dshi_0969 overlap by 38 nucleotides Dshi_0969 and Dshi_0970 overlap by 13 nucleotides Dshi_0970 and Dshi_0971 are separated by 11 nucleotides
Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933
_0967
Dshi_0968: Dshi_0968 - YCII-related (RefSeq), at 990,030 to 990,485
_0968
Dshi_0969: Dshi_0969 - Mannitol dehydrogenase domain (RefSeq), at 990,448 to 991,947
_0969
Dshi_0970: Dshi_0970 - short-chain dehydrogenase/reductase SDR (RefSeq), at 991,935 to 992,426
_0970
Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442
_0971
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 989.552 kb on - strand, within Dshi_0967 at 989.605 kb on + strand, within Dshi_0967 at 989.623 kb on - strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.644 kb on - strand, within Dshi_0967 at 989.688 kb on + strand, within Dshi_0967 at 989.693 kb on + strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.750 kb on - strand, within Dshi_0967 at 990.089 kb on + strand, within Dshi_0968 at 990.097 kb on - strand, within Dshi_0968 at 990.241 kb on + strand, within Dshi_0968 at 990.293 kb on + strand, within Dshi_0968 at 990.316 kb on + strand, within Dshi_0968 at 990.331 kb on + strand, within Dshi_0968 at 990.366 kb on + strand, within Dshi_0968 at 990.478 kb on + strand at 990.523 kb on + strand at 990.742 kb on + strand, within Dshi_0969 at 990.996 kb on - strand, within Dshi_0969 at 991.086 kb on - strand, within Dshi_0969 at 991.286 kb on + strand, within Dshi_0969 at 991.313 kb on - strand, within Dshi_0969 at 991.315 kb on + strand, within Dshi_0969 at 991.511 kb on + strand, within Dshi_0969 at 991.749 kb on + strand, within Dshi_0969 at 991.813 kb on + strand at 991.873 kb on + strand at 991.909 kb on + strand at 991.968 kb on + strand at 991.984 kb on + strand at 992.010 kb on - strand, within Dshi_0970 at 992.012 kb on + strand, within Dshi_0970 at 992.046 kb on - strand, within Dshi_0970 at 992.090 kb on - strand, within Dshi_0970 at 992.171 kb on + strand, within Dshi_0970 at 992.183 kb on + strand, within Dshi_0970 at 992.220 kb on - strand, within Dshi_0970 at 992.263 kb on - strand, within Dshi_0970 at 992.326 kb on - strand, within Dshi_0970 at 992.347 kb on - strand, within Dshi_0970 at 992.614 kb on + strand, within Dshi_0971 at 992.636 kb on - strand, within Dshi_0971 at 992.849 kb on - strand, within Dshi_0971 at 992.853 kb on + strand, within Dshi_0971 at 992.863 kb on + strand, within Dshi_0971 at 992.864 kb on + strand, within Dshi_0971 at 992.892 kb on - strand, within Dshi_0971 at 992.897 kb on - strand, within Dshi_0971
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 989,552 - Dshi_0967 0.57 +0.1 989,605 + Dshi_0967 0.63 +1.3 989,623 - Dshi_0967 0.65 -0.0 989,636 + Dshi_0967 0.66 +1.5 989,636 + Dshi_0967 0.66 -1.5 989,636 + Dshi_0967 0.66 +0.1 989,644 - Dshi_0967 0.67 +2.2 989,688 + Dshi_0967 0.72 -2.2 989,693 + Dshi_0967 0.73 -2.2 989,696 - Dshi_0967 0.73 +0.1 989,696 - Dshi_0967 0.73 -0.3 989,696 - Dshi_0967 0.73 +1.3 989,696 - Dshi_0967 0.73 +0.3 989,750 - Dshi_0967 0.79 +0.3 990,089 + Dshi_0968 0.13 +0.8 990,097 - Dshi_0968 0.15 -0.8 990,241 + Dshi_0968 0.46 +1.6 990,293 + Dshi_0968 0.58 -0.8 990,316 + Dshi_0968 0.63 +0.3 990,331 + Dshi_0968 0.66 -1.4 990,366 + Dshi_0968 0.74 -0.6 990,478 + +0.6 990,523 + +1.2 990,742 + Dshi_0969 0.20 +0.3 990,996 - Dshi_0969 0.37 +0.4 991,086 - Dshi_0969 0.43 +0.7 991,286 + Dshi_0969 0.56 +1.5 991,313 - Dshi_0969 0.58 +0.3 991,315 + Dshi_0969 0.58 +3.6 991,511 + Dshi_0969 0.71 +1.1 991,749 + Dshi_0969 0.87 -0.3 991,813 + +1.5 991,873 + -2.2 991,909 + -0.2 991,968 + +0.5 991,984 + +0.4 992,010 - Dshi_0970 0.15 -2.2 992,012 + Dshi_0970 0.16 +0.8 992,046 - Dshi_0970 0.23 +0.3 992,090 - Dshi_0970 0.32 -2.0 992,171 + Dshi_0970 0.48 -0.9 992,183 + Dshi_0970 0.50 +2.2 992,220 - Dshi_0970 0.58 +1.7 992,263 - Dshi_0970 0.67 -0.2 992,326 - Dshi_0970 0.79 +1.8 992,347 - Dshi_0970 0.84 +1.1 992,614 + Dshi_0971 0.18 -2.5 992,636 - Dshi_0971 0.20 +3.4 992,849 - Dshi_0971 0.41 -0.0 992,853 + Dshi_0971 0.41 +1.1 992,863 + Dshi_0971 0.42 +0.8 992,864 + Dshi_0971 0.42 +0.2 992,892 - Dshi_0971 0.45 -0.2 992,897 - Dshi_0971 0.46 +0.2
Or see this region's nucleotide sequence