Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0952 and Dshi_0953 are separated by 35 nucleotides Dshi_0953 and Dshi_0954 are separated by 250 nucleotides
Dshi_0952: Dshi_0952 - tryptophan synthase, alpha subunit (RefSeq), at 976,376 to 977,194
_0952
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Dshi_0954: Dshi_0954 - GTP-binding protein YchF (RefSeq), at 978,833 to 979,930
_0954
Position (kb)
977
978
979 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 976.340 kb on - strand at 977.319 kb on - strand at 977.350 kb on - strand at 977.424 kb on + strand, within Dshi_0953 at 977.454 kb on + strand, within Dshi_0953 at 977.460 kb on + strand, within Dshi_0953 at 977.490 kb on + strand, within Dshi_0953 at 977.497 kb on + strand, within Dshi_0953 at 977.512 kb on - strand, within Dshi_0953 at 977.522 kb on - strand, within Dshi_0953 at 977.543 kb on - strand, within Dshi_0953 at 977.660 kb on - strand, within Dshi_0953 at 977.760 kb on + strand, within Dshi_0953 at 977.783 kb on - strand, within Dshi_0953 at 977.788 kb on - strand, within Dshi_0953 at 977.791 kb on + strand, within Dshi_0953 at 977.822 kb on - strand, within Dshi_0953 at 977.832 kb on - strand, within Dshi_0953 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953 at 978.259 kb on + strand, within Dshi_0953 at 978.329 kb on + strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.349 kb on + strand, within Dshi_0953 at 978.378 kb on - strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.556 kb on + strand at 978.584 kb on + strand at 978.595 kb on - strand at 978.645 kb on + strand at 978.652 kb on - strand at 978.729 kb on - strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.764 kb on - strand at 979.160 kb on - strand, within Dshi_0954
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 976,340 - +0.5 977,319 - -0.8 977,350 - -1.2 977,424 + Dshi_0953 0.14 +0.8 977,454 + Dshi_0953 0.17 -1.5 977,460 + Dshi_0953 0.17 -0.8 977,490 + Dshi_0953 0.19 -2.9 977,497 + Dshi_0953 0.20 +0.8 977,512 - Dshi_0953 0.21 -2.2 977,522 - Dshi_0953 0.22 -0.7 977,543 - Dshi_0953 0.23 -1.1 977,660 - Dshi_0953 0.32 -4.7 977,760 + Dshi_0953 0.39 +3.1 977,783 - Dshi_0953 0.41 -2.8 977,788 - Dshi_0953 0.41 -1.9 977,791 + Dshi_0953 0.41 -1.5 977,822 - Dshi_0953 0.44 -0.2 977,832 - Dshi_0953 0.44 -1.2 977,955 + Dshi_0953 0.54 -0.8 977,994 - Dshi_0953 0.56 -1.5 978,006 + Dshi_0953 0.57 -1.2 978,020 + Dshi_0953 0.58 -0.8 978,057 - Dshi_0953 0.61 +0.8 978,080 + Dshi_0953 0.63 -3.7 978,259 + Dshi_0953 0.76 -3.6 978,329 + Dshi_0953 0.81 -1.2 978,337 - Dshi_0953 0.82 -2.0 978,337 - Dshi_0953 0.82 -2.5 978,349 + Dshi_0953 0.83 +0.8 978,378 - Dshi_0953 0.85 -3.4 978,437 + Dshi_0953 0.89 -0.2 978,437 + Dshi_0953 0.89 -0.2 978,556 + -1.5 978,584 + +1.3 978,595 - +3.1 978,645 + +1.5 978,652 - -1.3 978,729 - -3.6 978,756 + +3.4 978,756 + -2.7 978,756 + -0.4 978,764 - -1.9 979,160 - Dshi_0954 0.30 -3.4
Or see this region's nucleotide sequence