Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0887 and Dshi_0888 are separated by 7 nucleotides Dshi_0888 and Dshi_0889 are separated by 14 nucleotides
Dshi_0887: Dshi_0887 - Serine--glyoxylate transaminase (RefSeq), at 902,124 to 903,314
_0887
Dshi_0888: Dshi_0888 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 903,322 to 904,296
_0888
Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474
_0889
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 902.410 kb on + strand, within Dshi_0887 at 902.503 kb on - strand, within Dshi_0887 at 902.503 kb on - strand, within Dshi_0887 at 902.509 kb on - strand, within Dshi_0887 at 902.605 kb on - strand, within Dshi_0887 at 902.633 kb on - strand, within Dshi_0887 at 902.639 kb on - strand, within Dshi_0887 at 902.891 kb on + strand, within Dshi_0887 at 902.938 kb on + strand, within Dshi_0887 at 902.983 kb on + strand, within Dshi_0887 at 902.985 kb on - strand, within Dshi_0887 at 903.011 kb on + strand, within Dshi_0887 at 903.074 kb on - strand, within Dshi_0887 at 903.109 kb on + strand, within Dshi_0887 at 903.133 kb on + strand, within Dshi_0887 at 903.180 kb on - strand, within Dshi_0887 at 903.242 kb on + strand at 903.242 kb on + strand at 903.252 kb on - strand at 903.277 kb on + strand at 903.277 kb on + strand at 903.288 kb on + strand at 903.307 kb on - strand at 903.387 kb on + strand at 903.395 kb on - strand at 903.405 kb on + strand at 903.410 kb on + strand at 903.410 kb on + strand at 903.414 kb on + strand at 903.428 kb on - strand, within Dshi_0888 at 903.444 kb on + strand, within Dshi_0888 at 903.536 kb on + strand, within Dshi_0888 at 903.544 kb on - strand, within Dshi_0888 at 903.581 kb on + strand, within Dshi_0888 at 903.756 kb on - strand, within Dshi_0888 at 903.830 kb on + strand, within Dshi_0888 at 903.891 kb on + strand, within Dshi_0888 at 903.913 kb on - strand, within Dshi_0888 at 903.942 kb on - strand, within Dshi_0888 at 903.953 kb on + strand, within Dshi_0888 at 903.999 kb on + strand, within Dshi_0888 at 904.056 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.173 kb on + strand, within Dshi_0888 at 904.186 kb on - strand, within Dshi_0888 at 904.186 kb on - strand, within Dshi_0888 at 904.199 kb on - strand at 904.250 kb on - strand at 904.290 kb on + strand at 904.291 kb on + strand at 904.295 kb on + strand at 904.299 kb on - strand at 904.337 kb on + strand at 904.425 kb on + strand at 904.561 kb on + strand, within Dshi_0889 at 904.561 kb on + strand, within Dshi_0889 at 904.592 kb on - strand, within Dshi_0889 at 904.623 kb on + strand, within Dshi_0889 at 905.066 kb on + strand, within Dshi_0889 at 905.067 kb on + strand, within Dshi_0889 at 905.077 kb on + strand, within Dshi_0889 at 905.085 kb on - strand, within Dshi_0889 at 905.218 kb on + strand, within Dshi_0889
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 902,410 + Dshi_0887 0.24 -0.1 902,503 - Dshi_0887 0.32 -2.7 902,503 - Dshi_0887 0.32 -0.6 902,509 - Dshi_0887 0.32 -0.5 902,605 - Dshi_0887 0.40 -1.4 902,633 - Dshi_0887 0.43 -0.1 902,639 - Dshi_0887 0.43 +1.1 902,891 + Dshi_0887 0.64 -0.2 902,938 + Dshi_0887 0.68 -4.4 902,983 + Dshi_0887 0.72 -0.9 902,985 - Dshi_0887 0.72 -2.5 903,011 + Dshi_0887 0.74 -1.6 903,074 - Dshi_0887 0.80 -3.4 903,109 + Dshi_0887 0.83 +0.1 903,133 + Dshi_0887 0.85 -1.2 903,180 - Dshi_0887 0.89 -0.0 903,242 + -0.2 903,242 + -0.5 903,252 - +0.8 903,277 + +0.8 903,277 + +0.5 903,288 + -1.5 903,307 - -2.0 903,387 + +1.4 903,395 - +1.2 903,405 + -1.1 903,410 + -0.2 903,410 + -2.5 903,414 + -0.0 903,428 - Dshi_0888 0.11 -1.5 903,444 + Dshi_0888 0.13 -1.2 903,536 + Dshi_0888 0.22 -0.8 903,544 - Dshi_0888 0.23 -1.4 903,581 + Dshi_0888 0.27 -0.2 903,756 - Dshi_0888 0.45 +0.7 903,830 + Dshi_0888 0.52 -1.7 903,891 + Dshi_0888 0.58 -1.1 903,913 - Dshi_0888 0.61 -0.8 903,942 - Dshi_0888 0.64 +0.2 903,953 + Dshi_0888 0.65 +0.8 903,999 + Dshi_0888 0.69 +0.8 904,056 - Dshi_0888 0.75 -0.0 904,099 - Dshi_0888 0.80 +0.8 904,099 - Dshi_0888 0.80 +2.9 904,099 - Dshi_0888 0.80 +0.3 904,173 + Dshi_0888 0.87 -2.9 904,186 - Dshi_0888 0.89 -1.5 904,186 - Dshi_0888 0.89 +0.8 904,199 - +0.8 904,250 - +1.5 904,290 + +0.4 904,291 + -2.0 904,295 + +1.2 904,299 - -3.2 904,337 + +0.1 904,425 + +0.4 904,561 + Dshi_0889 0.21 -0.4 904,561 + Dshi_0889 0.21 -0.2 904,592 - Dshi_0889 0.24 +0.2 904,623 + Dshi_0889 0.27 -1.9 905,066 + Dshi_0889 0.65 -0.4 905,067 + Dshi_0889 0.65 -1.0 905,077 + Dshi_0889 0.66 +0.3 905,085 - Dshi_0889 0.66 -2.9 905,218 + Dshi_0889 0.78 +0.6
Or see this region's nucleotide sequence