Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0885

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0884 and Dshi_0885 overlap by 4 nucleotidesDshi_0885 and Dshi_0886 are separated by 3 nucleotides Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113 _0884 Dshi_0885: Dshi_0885 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 900,110 to 901,078 _0885 Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924 _0886 Position (kb) 900 901 902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 899.151 kb on + strand, within Dshi_0884at 899.328 kb on + strand, within Dshi_0884at 899.437 kb on + strand, within Dshi_0884at 899.515 kb on + strand, within Dshi_0884at 899.550 kb on - strand, within Dshi_0884at 899.589 kb on - strand, within Dshi_0884at 899.757 kb on - strand, within Dshi_0884at 899.765 kb on - strand, within Dshi_0884at 899.785 kb on + strandat 899.815 kb on + strand, within Dshi_0884at 899.846 kb on - strand, within Dshi_0884at 899.957 kb on + strand, within Dshi_0884at 900.076 kb on - strandat 900.147 kb on + strandat 900.201 kb on - strandat 900.224 kb on - strand, within Dshi_0885at 900.392 kb on - strand, within Dshi_0885at 900.428 kb on - strand, within Dshi_0885at 900.501 kb on + strand, within Dshi_0885at 900.501 kb on + strand, within Dshi_0885at 900.650 kb on + strand, within Dshi_0885at 900.772 kb on - strand, within Dshi_0885at 900.831 kb on + strand, within Dshi_0885at 900.839 kb on - strand, within Dshi_0885at 900.875 kb on - strand, within Dshi_0885at 900.967 kb on - strand, within Dshi_0885at 901.056 kb on + strandat 901.262 kb on + strand, within Dshi_0886at 901.270 kb on - strand, within Dshi_0886at 901.347 kb on - strand, within Dshi_0886at 901.347 kb on - strand, within Dshi_0886at 901.349 kb on + strand, within Dshi_0886at 901.358 kb on - strand, within Dshi_0886at 901.373 kb on + strand, within Dshi_0886at 901.513 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.638 kb on - strand, within Dshi_0886at 901.819 kb on + strand, within Dshi_0886at 901.829 kb on - strand, within Dshi_0886at 901.843 kb on + strandat 901.846 kb on - strandat 901.846 kb on - strandat 901.892 kb on + strandat 901.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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899,151 + Dshi_0884 0.11 -1.1
899,328 + Dshi_0884 0.27 +1.1
899,437 + Dshi_0884 0.37 -0.2
899,515 + Dshi_0884 0.45 +1.1
899,550 - Dshi_0884 0.48 -3.0
899,589 - Dshi_0884 0.52 +0.8
899,757 - Dshi_0884 0.67 -0.2
899,765 - Dshi_0884 0.68 +1.8
899,785 + +0.8
899,815 + Dshi_0884 0.72 -2.2
899,846 - Dshi_0884 0.75 +0.7
899,957 + Dshi_0884 0.86 -2.2
900,076 - +0.4
900,147 + -4.0
900,201 - -1.5
900,224 - Dshi_0885 0.12 +2.0
900,392 - Dshi_0885 0.29 +2.1
900,428 - Dshi_0885 0.33 -2.9
900,501 + Dshi_0885 0.40 +0.8
900,501 + Dshi_0885 0.40 -2.4
900,650 + Dshi_0885 0.56 -0.1
900,772 - Dshi_0885 0.68 -2.4
900,831 + Dshi_0885 0.74 +0.8
900,839 - Dshi_0885 0.75 -0.4
900,875 - Dshi_0885 0.79 +2.6
900,967 - Dshi_0885 0.88 +0.2
901,056 + -0.0
901,262 + Dshi_0886 0.21 +0.7
901,270 - Dshi_0886 0.22 +1.8
901,347 - Dshi_0886 0.31 +0.8
901,347 - Dshi_0886 0.31 +0.8
901,349 + Dshi_0886 0.32 -2.8
901,358 - Dshi_0886 0.33 -1.2
901,373 + Dshi_0886 0.35 -2.7
901,513 - Dshi_0886 0.51 -1.2
901,514 - Dshi_0886 0.51 +0.8
901,514 - Dshi_0886 0.51 -1.7
901,514 - Dshi_0886 0.51 -0.8
901,514 - Dshi_0886 0.51 +0.1
901,638 - Dshi_0886 0.66 -2.2
901,819 + Dshi_0886 0.87 -0.4
901,829 - Dshi_0886 0.89 -0.8
901,843 + -1.0
901,846 - -0.8
901,846 - -1.2
901,892 + -2.7
901,905 + +2.8

Or see this region's nucleotide sequence