Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0884 and Dshi_0885 overlap by 4 nucleotides Dshi_0885 and Dshi_0886 are separated by 3 nucleotides
Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113
_0884
Dshi_0885: Dshi_0885 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 900,110 to 901,078
_0885
Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924
_0886
Position (kb)
900
901
902 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 899.151 kb on + strand, within Dshi_0884 at 899.328 kb on + strand, within Dshi_0884 at 899.437 kb on + strand, within Dshi_0884 at 899.515 kb on + strand, within Dshi_0884 at 899.550 kb on - strand, within Dshi_0884 at 899.589 kb on - strand, within Dshi_0884 at 899.757 kb on - strand, within Dshi_0884 at 899.765 kb on - strand, within Dshi_0884 at 899.785 kb on + strand at 899.815 kb on + strand, within Dshi_0884 at 899.846 kb on - strand, within Dshi_0884 at 899.957 kb on + strand, within Dshi_0884 at 900.076 kb on - strand at 900.147 kb on + strand at 900.201 kb on - strand at 900.224 kb on - strand, within Dshi_0885 at 900.392 kb on - strand, within Dshi_0885 at 900.428 kb on - strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.650 kb on + strand, within Dshi_0885 at 900.772 kb on - strand, within Dshi_0885 at 900.831 kb on + strand, within Dshi_0885 at 900.839 kb on - strand, within Dshi_0885 at 900.875 kb on - strand, within Dshi_0885 at 900.967 kb on - strand, within Dshi_0885 at 901.056 kb on + strand at 901.262 kb on + strand, within Dshi_0886 at 901.270 kb on - strand, within Dshi_0886 at 901.347 kb on - strand, within Dshi_0886 at 901.347 kb on - strand, within Dshi_0886 at 901.349 kb on + strand, within Dshi_0886 at 901.358 kb on - strand, within Dshi_0886 at 901.373 kb on + strand, within Dshi_0886 at 901.513 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.638 kb on - strand, within Dshi_0886 at 901.819 kb on + strand, within Dshi_0886 at 901.829 kb on - strand, within Dshi_0886 at 901.843 kb on + strand at 901.846 kb on - strand at 901.846 kb on - strand at 901.892 kb on + strand at 901.905 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 899,151 + Dshi_0884 0.11 -1.1 899,328 + Dshi_0884 0.27 +1.1 899,437 + Dshi_0884 0.37 -0.2 899,515 + Dshi_0884 0.45 +1.1 899,550 - Dshi_0884 0.48 -3.0 899,589 - Dshi_0884 0.52 +0.8 899,757 - Dshi_0884 0.67 -0.2 899,765 - Dshi_0884 0.68 +1.8 899,785 + +0.8 899,815 + Dshi_0884 0.72 -2.2 899,846 - Dshi_0884 0.75 +0.7 899,957 + Dshi_0884 0.86 -2.2 900,076 - +0.4 900,147 + -4.0 900,201 - -1.5 900,224 - Dshi_0885 0.12 +2.0 900,392 - Dshi_0885 0.29 +2.1 900,428 - Dshi_0885 0.33 -2.9 900,501 + Dshi_0885 0.40 +0.8 900,501 + Dshi_0885 0.40 -2.4 900,650 + Dshi_0885 0.56 -0.1 900,772 - Dshi_0885 0.68 -2.4 900,831 + Dshi_0885 0.74 +0.8 900,839 - Dshi_0885 0.75 -0.4 900,875 - Dshi_0885 0.79 +2.6 900,967 - Dshi_0885 0.88 +0.2 901,056 + -0.0 901,262 + Dshi_0886 0.21 +0.7 901,270 - Dshi_0886 0.22 +1.8 901,347 - Dshi_0886 0.31 +0.8 901,347 - Dshi_0886 0.31 +0.8 901,349 + Dshi_0886 0.32 -2.8 901,358 - Dshi_0886 0.33 -1.2 901,373 + Dshi_0886 0.35 -2.7 901,513 - Dshi_0886 0.51 -1.2 901,514 - Dshi_0886 0.51 +0.8 901,514 - Dshi_0886 0.51 -1.7 901,514 - Dshi_0886 0.51 -0.8 901,514 - Dshi_0886 0.51 +0.1 901,638 - Dshi_0886 0.66 -2.2 901,819 + Dshi_0886 0.87 -0.4 901,829 - Dshi_0886 0.89 -0.8 901,843 + -1.0 901,846 - -0.8 901,846 - -1.2 901,892 + -2.7 901,905 + +2.8
Or see this region's nucleotide sequence