Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0862 and Dshi_0863 are separated by 32 nucleotides Dshi_0863 and Dshi_0864 are separated by 214 nucleotides Dshi_0864 and Dshi_0865 are separated by 1 nucleotides
Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795
_0862
Dshi_0863: Dshi_0863 - transcriptional regulator, AsnC family (RefSeq), at 878,828 to 879,064
_0863
Dshi_0864: Dshi_0864 - (2Fe-2S)-binding domain protein (RefSeq), at 879,279 to 879,737
_0864
Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922
_0865
Position (kb) 878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 877.905 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 878.018 kb on + strand, within Dshi_0862 at 878.104 kb on - strand, within Dshi_0862 at 878.225 kb on + strand, within Dshi_0862 at 878.227 kb on - strand, within Dshi_0862 at 878.230 kb on + strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.254 kb on + strand, within Dshi_0862 at 878.294 kb on + strand, within Dshi_0862 at 878.317 kb on + strand, within Dshi_0862 at 878.372 kb on + strand, within Dshi_0862 at 878.401 kb on - strand, within Dshi_0862 at 878.464 kb on - strand, within Dshi_0862 at 878.482 kb on + strand, within Dshi_0862 at 878.553 kb on - strand, within Dshi_0862 at 878.621 kb on - strand at 878.681 kb on - strand, within Dshi_0862 at 878.726 kb on + strand at 878.734 kb on - strand at 878.738 kb on - strand at 878.739 kb on - strand at 878.779 kb on - strand at 878.826 kb on + strand at 878.842 kb on + strand at 878.850 kb on - strand at 878.906 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.995 kb on + strand, within Dshi_0863 at 879.003 kb on - strand, within Dshi_0863 at 879.049 kb on - strand at 879.059 kb on + strand at 879.067 kb on - strand at 879.067 kb on - strand at 879.081 kb on - strand at 879.112 kb on + strand at 879.192 kb on - strand at 879.221 kb on - strand at 879.231 kb on - strand at 879.245 kb on - strand at 879.294 kb on - strand at 879.369 kb on - strand, within Dshi_0864 at 879.502 kb on - strand, within Dshi_0864 at 879.528 kb on + strand, within Dshi_0864 at 879.571 kb on + strand, within Dshi_0864 at 879.678 kb on - strand, within Dshi_0864 at 879.752 kb on - strand at 879.758 kb on - strand at 879.856 kb on + strand at 879.864 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.900 kb on + strand at 879.949 kb on + strand at 879.972 kb on + strand, within Dshi_0865 at 880.012 kb on - strand, within Dshi_0865 at 880.047 kb on + strand, within Dshi_0865 at 880.055 kb on - strand, within Dshi_0865
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 877,905 + Dshi_0862 0.22 +0.8 877,941 + Dshi_0862 0.25 -0.1 877,941 + Dshi_0862 0.25 -2.0 878,018 + Dshi_0862 0.32 +0.5 878,104 - Dshi_0862 0.39 -1.2 878,225 + Dshi_0862 0.50 -1.2 878,227 - Dshi_0862 0.50 -0.4 878,230 + Dshi_0862 0.50 -1.1 878,238 - Dshi_0862 0.51 -0.2 878,238 - Dshi_0862 0.51 +0.6 878,254 + Dshi_0862 0.52 +0.8 878,294 + Dshi_0862 0.56 +1.4 878,317 + Dshi_0862 0.58 -0.8 878,372 + Dshi_0862 0.63 +2.6 878,401 - Dshi_0862 0.65 +0.2 878,464 - Dshi_0862 0.71 -0.8 878,482 + Dshi_0862 0.72 +2.4 878,553 - Dshi_0862 0.79 +4.9 878,621 - +0.8 878,681 - Dshi_0862 0.90 -2.2 878,726 + +2.1 878,734 - +1.8 878,738 - -0.5 878,739 - -2.2 878,779 - +0.8 878,826 + +2.3 878,842 + +1.2 878,850 - -1.8 878,906 + Dshi_0863 0.33 +2.8 878,911 + Dshi_0863 0.35 +3.4 878,911 + Dshi_0863 0.35 +0.8 878,995 + Dshi_0863 0.70 -0.1 879,003 - Dshi_0863 0.74 -0.2 879,049 - -0.3 879,059 + -2.2 879,067 - -1.2 879,067 - -1.4 879,081 - +0.8 879,112 + -2.4 879,192 - +1.6 879,221 - -2.2 879,231 - -2.8 879,245 - -0.2 879,294 - +3.1 879,369 - Dshi_0864 0.20 +0.0 879,502 - Dshi_0864 0.49 -2.4 879,528 + Dshi_0864 0.54 +0.7 879,571 + Dshi_0864 0.64 -0.8 879,678 - Dshi_0864 0.87 +1.4 879,752 - -2.8 879,758 - -0.3 879,856 + +2.8 879,864 - -1.5 879,878 + +2.8 879,886 - -0.2 879,900 + +0.1 879,949 + -4.1 879,972 + Dshi_0865 0.11 +0.8 880,012 - Dshi_0865 0.12 +2.4 880,047 + Dshi_0865 0.14 +4.0 880,055 - Dshi_0865 0.14 -0.2
Or see this region's nucleotide sequence