Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0841 and Dshi_0842 are separated by 42 nucleotides Dshi_0842 and Dshi_0843 are separated by 113 nucleotides Dshi_0843 and Dshi_0844 overlap by 1 nucleotides Dshi_0844 and Dshi_0845 overlap by 8 nucleotides
Dshi_0841: Dshi_0841 - hypothetical protein (RefSeq), at 852,286 to 853,314
_0841
Dshi_0842: Dshi_0842 - transcriptional regulator, MerR family (RefSeq), at 853,357 to 853,728
_0842
Dshi_0843: Dshi_0843 - thioesterase superfamily protein (RefSeq), at 853,842 to 854,276
_0843
Dshi_0844: Dshi_0844 - thioesterase superfamily protein (RefSeq), at 854,276 to 854,797
_0844
Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109
_0845
Position (kb)
853
854
855 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 852.863 kb on + strand, within Dshi_0841 at 852.900 kb on + strand, within Dshi_0841 at 853.059 kb on + strand, within Dshi_0841 at 853.067 kb on - strand, within Dshi_0841 at 853.087 kb on - strand, within Dshi_0841 at 853.087 kb on - strand, within Dshi_0841 at 853.129 kb on - strand, within Dshi_0841 at 853.160 kb on - strand, within Dshi_0841 at 853.191 kb on - strand, within Dshi_0841 at 853.360 kb on + strand at 853.368 kb on - strand at 853.435 kb on + strand, within Dshi_0842 at 853.601 kb on + strand, within Dshi_0842 at 853.601 kb on + strand, within Dshi_0842 at 853.626 kb on + strand, within Dshi_0842 at 853.658 kb on - strand, within Dshi_0842 at 853.667 kb on - strand, within Dshi_0842 at 853.681 kb on + strand, within Dshi_0842 at 853.689 kb on - strand, within Dshi_0842 at 853.725 kb on - strand at 853.742 kb on + strand at 853.744 kb on - strand at 853.815 kb on + strand at 853.816 kb on - strand at 853.831 kb on - strand at 853.838 kb on + strand at 853.838 kb on + strand at 853.846 kb on - strand at 853.857 kb on - strand at 854.042 kb on - strand, within Dshi_0843 at 854.123 kb on - strand, within Dshi_0843 at 854.222 kb on - strand, within Dshi_0843 at 854.284 kb on + strand at 854.682 kb on + strand, within Dshi_0844 at 855.027 kb on + strand, within Dshi_0845 at 855.042 kb on - strand, within Dshi_0845 at 855.053 kb on + strand, within Dshi_0845 at 855.063 kb on + strand, within Dshi_0845 at 855.071 kb on - strand, within Dshi_0845 at 855.102 kb on - strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.191 kb on + strand, within Dshi_0845
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 852,863 + Dshi_0841 0.56 +1.5 852,900 + Dshi_0841 0.60 -0.3 853,059 + Dshi_0841 0.75 +1.6 853,067 - Dshi_0841 0.76 +0.8 853,087 - Dshi_0841 0.78 -1.5 853,087 - Dshi_0841 0.78 +0.8 853,129 - Dshi_0841 0.82 +1.3 853,160 - Dshi_0841 0.85 +0.1 853,191 - Dshi_0841 0.88 -3.9 853,360 + -0.6 853,368 - -2.0 853,435 + Dshi_0842 0.21 +0.8 853,601 + Dshi_0842 0.66 +1.5 853,601 + Dshi_0842 0.66 -1.2 853,626 + Dshi_0842 0.72 +1.2 853,658 - Dshi_0842 0.81 -0.2 853,667 - Dshi_0842 0.83 +3.1 853,681 + Dshi_0842 0.87 +1.8 853,689 - Dshi_0842 0.89 -1.2 853,725 - -2.0 853,742 + +2.4 853,744 - +2.8 853,815 + +3.8 853,816 - -0.2 853,831 - -1.2 853,838 + -1.2 853,838 + -1.2 853,846 - -0.2 853,857 - +0.8 854,042 - Dshi_0843 0.46 -0.8 854,123 - Dshi_0843 0.65 +0.8 854,222 - Dshi_0843 0.87 +1.7 854,284 + +2.0 854,682 + Dshi_0844 0.78 +0.8 855,027 + Dshi_0845 0.18 +0.7 855,042 - Dshi_0845 0.19 +0.8 855,053 + Dshi_0845 0.20 +2.3 855,063 + Dshi_0845 0.21 +0.6 855,071 - Dshi_0845 0.21 +0.8 855,102 - Dshi_0845 0.24 -2.5 855,131 + Dshi_0845 0.26 -2.2 855,131 + Dshi_0845 0.26 +0.8 855,139 - Dshi_0845 0.26 -1.2 855,139 - Dshi_0845 0.26 +0.8 855,191 + Dshi_0845 0.30 -2.4
Or see this region's nucleotide sequence