Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0815 and Dshi_0816 are separated by 46 nucleotides Dshi_0816 and Dshi_0817 are separated by 76 nucleotides Dshi_0817 and Dshi_0818 overlap by 4 nucleotides Dshi_0818 and Dshi_0819 are separated by 24 nucleotides Dshi_0819 and Dshi_0820 are separated by 220 nucleotides
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522
_0817
Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725
_0818
Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046
_0819
Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034
_0820
Position (kb)
823
824
825 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815 at 822.993 kb on - strand, within Dshi_0816 at 823.175 kb on + strand at 823.242 kb on + strand at 823.242 kb on + strand at 823.267 kb on - strand at 823.288 kb on + strand, within Dshi_0817 at 823.306 kb on + strand, within Dshi_0817 at 823.321 kb on + strand, within Dshi_0817 at 823.384 kb on - strand, within Dshi_0817 at 823.573 kb on - strand, within Dshi_0818 at 823.708 kb on + strand at 823.793 kb on - strand, within Dshi_0819 at 823.830 kb on - strand, within Dshi_0819 at 823.857 kb on - strand, within Dshi_0819 at 823.908 kb on + strand, within Dshi_0819 at 823.942 kb on + strand, within Dshi_0819 at 823.957 kb on + strand, within Dshi_0819 at 823.974 kb on - strand, within Dshi_0819 at 824.006 kb on + strand, within Dshi_0819 at 824.077 kb on + strand at 824.085 kb on - strand at 824.101 kb on + strand at 824.101 kb on + strand at 824.109 kb on - strand at 824.167 kb on + strand at 824.319 kb on + strand at 824.451 kb on - strand, within Dshi_0820 at 824.451 kb on - strand, within Dshi_0820 at 824.686 kb on + strand, within Dshi_0820 at 824.794 kb on - strand, within Dshi_0820 at 824.876 kb on - strand, within Dshi_0820 at 824.917 kb on + strand, within Dshi_0820 at 824.969 kb on - strand at 825.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 822,771 - Dshi_0815 0.78 -1.2 822,796 + Dshi_0815 0.84 +3.2 822,993 - Dshi_0816 0.30 +0.8 823,175 + +1.7 823,242 + +0.7 823,242 + -2.7 823,267 - +1.2 823,288 + Dshi_0817 0.10 +0.8 823,306 + Dshi_0817 0.17 +1.2 823,321 + Dshi_0817 0.23 +4.3 823,384 - Dshi_0817 0.47 +2.4 823,573 - Dshi_0818 0.26 +0.9 823,708 + -3.8 823,793 - Dshi_0819 0.14 +0.7 823,830 - Dshi_0819 0.27 +0.6 823,857 - Dshi_0819 0.36 -1.3 823,908 + Dshi_0819 0.53 +0.8 823,942 + Dshi_0819 0.65 -0.7 823,957 + Dshi_0819 0.70 -2.6 823,974 - Dshi_0819 0.75 +0.8 824,006 + Dshi_0819 0.86 +0.8 824,077 + +0.8 824,085 - -0.7 824,101 + -0.6 824,101 + -1.2 824,109 - +1.0 824,167 + +0.2 824,319 + -0.2 824,451 - Dshi_0820 0.24 +0.3 824,451 - Dshi_0820 0.24 +2.3 824,686 + Dshi_0820 0.55 +2.4 824,794 - Dshi_0820 0.69 +1.1 824,876 - Dshi_0820 0.79 +0.3 824,917 + Dshi_0820 0.85 +0.8 824,969 - -0.2 825,020 - +1.8
Or see this region's nucleotide sequence