Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0726 and Dshi_0727 are separated by 178 nucleotides Dshi_0727 and Dshi_0728 are separated by 353 nucleotides
Dshi_0726: Dshi_0726 - methylmalonyl-CoA mutase, large subunit (RefSeq), at 733,404 to 735,542
_0726
Dshi_0727: Dshi_0727 - transcriptional regulator, LysR family (RefSeq), at 735,721 to 736,650
_0727
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 735.641 kb on - strand at 735.707 kb on + strand at 735.739 kb on - strand at 735.799 kb on + strand at 735.862 kb on - strand, within Dshi_0727 at 735.884 kb on - strand at 735.988 kb on - strand, within Dshi_0727 at 736.000 kb on - strand, within Dshi_0727 at 736.043 kb on - strand, within Dshi_0727 at 736.115 kb on + strand, within Dshi_0727 at 736.192 kb on - strand, within Dshi_0727 at 736.493 kb on + strand, within Dshi_0727 at 736.493 kb on + strand, within Dshi_0727 at 736.501 kb on - strand, within Dshi_0727 at 736.501 kb on - strand, within Dshi_0727 at 736.529 kb on + strand, within Dshi_0727 at 736.629 kb on + strand at 736.637 kb on - strand at 736.653 kb on - strand at 736.743 kb on + strand at 736.749 kb on + strand at 736.757 kb on - strand at 736.757 kb on - strand at 736.829 kb on + strand at 736.836 kb on - strand at 736.855 kb on + strand at 736.857 kb on - strand at 736.863 kb on - strand at 736.863 kb on - strand at 736.877 kb on + strand at 736.885 kb on - strand at 736.899 kb on + strand at 736.936 kb on + strand at 736.936 kb on - strand at 736.947 kb on + strand at 736.947 kb on + strand at 736.952 kb on + strand at 736.952 kb on + strand at 736.968 kb on + strand at 736.973 kb on + strand at 736.976 kb on - strand at 736.976 kb on - strand at 737.012 kb on + strand at 737.034 kb on + strand at 737.077 kb on - strand at 737.077 kb on - strand at 737.086 kb on + strand at 737.086 kb on + strand at 737.092 kb on + strand at 737.096 kb on + strand at 737.097 kb on + strand at 737.105 kb on - strand at 737.208 kb on + strand at 737.221 kb on - strand at 737.326 kb on + strand, within Dshi_0728 at 737.367 kb on - strand, within Dshi_0728 at 737.464 kb on - strand, within Dshi_0728 at 737.469 kb on + strand, within Dshi_0728 at 737.503 kb on + strand, within Dshi_0728 at 737.548 kb on + strand, within Dshi_0728 at 737.553 kb on + strand, within Dshi_0728 at 737.615 kb on + strand, within Dshi_0728 at 737.632 kb on - strand, within Dshi_0728 at 737.632 kb on - strand, within Dshi_0728 at 737.648 kb on - strand, within Dshi_0728
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 735,641 - +0.9 735,707 + -1.7 735,739 - +0.2 735,799 + -0.5 735,862 - Dshi_0727 0.15 +0.3 735,884 - +0.9 735,988 - Dshi_0727 0.29 +0.4 736,000 - Dshi_0727 0.30 -0.1 736,043 - Dshi_0727 0.35 +0.9 736,115 + Dshi_0727 0.42 +0.3 736,192 - Dshi_0727 0.51 -1.9 736,493 + Dshi_0727 0.83 -3.4 736,493 + Dshi_0727 0.83 +0.9 736,501 - Dshi_0727 0.84 -0.3 736,501 - Dshi_0727 0.84 +0.7 736,529 + Dshi_0727 0.87 -0.2 736,629 + -1.9 736,637 - +1.4 736,653 - -0.9 736,743 + -0.5 736,749 + -3.5 736,757 - -0.7 736,757 - +1.6 736,829 + -1.1 736,836 - +3.7 736,855 + +0.4 736,857 - +0.1 736,863 - -1.9 736,863 - +0.7 736,877 + +0.5 736,885 - +1.1 736,899 + +0.9 736,936 + +2.9 736,936 - -1.4 736,947 + +1.3 736,947 + +0.0 736,952 + -0.1 736,952 + +0.9 736,968 + -1.6 736,973 + -1.4 736,976 - +0.6 736,976 - +0.9 737,012 + +0.9 737,034 + -2.7 737,077 - -2.9 737,077 - +0.4 737,086 + +1.5 737,086 + -0.1 737,092 + -1.0 737,096 + +1.5 737,097 + +0.4 737,105 - +0.9 737,208 + +2.0 737,221 - +2.0 737,326 + Dshi_0728 0.14 -1.3 737,367 - Dshi_0728 0.16 -2.8 737,464 - Dshi_0728 0.21 -1.0 737,469 + Dshi_0728 0.21 +0.9 737,503 + Dshi_0728 0.22 -0.2 737,548 + Dshi_0728 0.24 -0.5 737,553 + Dshi_0728 0.24 -2.6 737,615 + Dshi_0728 0.27 -0.5 737,632 - Dshi_0728 0.28 -2.7 737,632 - Dshi_0728 0.28 -1.7 737,648 - Dshi_0728 0.29 +1.6
Or see this region's nucleotide sequence