Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0709 and Dshi_0710 are separated by 65 nucleotides Dshi_0710 and Dshi_0711 overlap by 55 nucleotides Dshi_0711 and Dshi_0712 are separated by 90 nucleotides
Dshi_0709: Dshi_0709 - coenzyme A transferase (RefSeq), at 716,718 to 718,664
_0709
Dshi_0710: Dshi_0710 - hypothetical protein (RefSeq), at 718,730 to 719,377
_0710
Dshi_0711: Dshi_0711 - transcriptional regulator, LysR family (RefSeq), at 719,323 to 720,249
_0711
Dshi_0712: Dshi_0712 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 720,340 to 720,966
_0712
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 717.797 kb on + strand, within Dshi_0709 at 717.810 kb on + strand, within Dshi_0709 at 717.812 kb on + strand, within Dshi_0709 at 717.818 kb on - strand, within Dshi_0709 at 717.830 kb on - strand, within Dshi_0709 at 717.986 kb on + strand, within Dshi_0709 at 718.290 kb on - strand, within Dshi_0709 at 718.317 kb on + strand, within Dshi_0709 at 718.365 kb on + strand, within Dshi_0709 at 718.366 kb on + strand, within Dshi_0709 at 718.396 kb on - strand, within Dshi_0709 at 718.405 kb on - strand, within Dshi_0709 at 718.407 kb on + strand, within Dshi_0709 at 718.556 kb on + strand at 718.579 kb on + strand at 718.736 kb on - strand at 718.931 kb on - strand, within Dshi_0710 at 719.086 kb on - strand, within Dshi_0710 at 719.246 kb on - strand, within Dshi_0710 at 719.273 kb on + strand, within Dshi_0710 at 719.396 kb on + strand at 719.396 kb on + strand at 719.422 kb on + strand, within Dshi_0711 at 719.638 kb on - strand, within Dshi_0711 at 719.681 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.880 kb on - strand, within Dshi_0711 at 719.936 kb on - strand, within Dshi_0711 at 719.938 kb on + strand, within Dshi_0711 at 719.982 kb on + strand, within Dshi_0711 at 720.083 kb on + strand, within Dshi_0711 at 720.091 kb on - strand, within Dshi_0711 at 720.134 kb on + strand, within Dshi_0711 at 720.168 kb on + strand at 720.330 kb on + strand at 720.330 kb on + strand at 720.338 kb on - strand at 720.353 kb on + strand at 720.355 kb on - strand at 720.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 717,797 + Dshi_0709 0.55 -0.6 717,810 + Dshi_0709 0.56 -0.6 717,812 + Dshi_0709 0.56 +2.5 717,818 - Dshi_0709 0.56 +1.1 717,830 - Dshi_0709 0.57 +2.4 717,986 + Dshi_0709 0.65 +2.2 718,290 - Dshi_0709 0.81 -2.2 718,317 + Dshi_0709 0.82 -0.1 718,365 + Dshi_0709 0.85 +0.9 718,366 + Dshi_0709 0.85 -0.1 718,396 - Dshi_0709 0.86 -0.1 718,405 - Dshi_0709 0.87 -0.2 718,407 + Dshi_0709 0.87 +1.4 718,556 + -2.5 718,579 + +0.9 718,736 - +0.0 718,931 - Dshi_0710 0.31 -0.1 719,086 - Dshi_0710 0.55 -1.1 719,246 - Dshi_0710 0.80 -1.7 719,273 + Dshi_0710 0.84 +0.9 719,396 + +2.2 719,396 + +0.9 719,422 + Dshi_0711 0.11 +0.9 719,638 - Dshi_0711 0.34 +2.1 719,681 - Dshi_0711 0.39 -0.3 719,787 - Dshi_0711 0.50 -0.6 719,787 - Dshi_0711 0.50 -2.8 719,880 - Dshi_0711 0.60 +2.2 719,936 - Dshi_0711 0.66 +4.2 719,938 + Dshi_0711 0.66 +0.9 719,982 + Dshi_0711 0.71 +0.6 720,083 + Dshi_0711 0.82 +1.2 720,091 - Dshi_0711 0.83 +0.5 720,134 + Dshi_0711 0.87 +0.6 720,168 + +0.4 720,330 + -0.8 720,330 + +0.9 720,338 - -1.4 720,353 + -1.1 720,355 - +0.9 720,368 + -0.7
Or see this region's nucleotide sequence