Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0645 and Dshi_0646 are separated by 58 nucleotides Dshi_0646 and Dshi_0647 are separated by 191 nucleotides
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Dshi_0646: Dshi_0646 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 645,472 to 647,574
_0646
Dshi_0647: Dshi_0647 - hypothetical protein (RefSeq), at 647,766 to 650,513
_0647
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645 at 645.406 kb on - strand at 645.406 kb on - strand at 645.657 kb on - strand at 645.662 kb on - strand at 645.708 kb on - strand, within Dshi_0646 at 645.844 kb on - strand, within Dshi_0646 at 645.878 kb on - strand, within Dshi_0646 at 645.909 kb on + strand, within Dshi_0646 at 645.911 kb on - strand, within Dshi_0646 at 646.026 kb on - strand, within Dshi_0646 at 646.154 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.476 kb on - strand, within Dshi_0646 at 646.507 kb on + strand, within Dshi_0646 at 646.558 kb on + strand, within Dshi_0646 at 646.709 kb on + strand, within Dshi_0646 at 646.751 kb on + strand, within Dshi_0646 at 646.784 kb on + strand, within Dshi_0646 at 646.835 kb on - strand, within Dshi_0646 at 646.848 kb on - strand, within Dshi_0646 at 646.925 kb on - strand, within Dshi_0646 at 646.925 kb on - strand, within Dshi_0646 at 647.343 kb on - strand, within Dshi_0646 at 647.395 kb on + strand at 647.485 kb on + strand at 647.581 kb on + strand at 647.615 kb on - strand at 647.644 kb on + strand at 647.682 kb on + strand at 647.690 kb on - strand at 647.817 kb on + strand at 647.825 kb on - strand at 647.871 kb on - strand at 647.871 kb on - strand at 648.083 kb on - strand, within Dshi_0647 at 648.219 kb on + strand, within Dshi_0647 at 648.220 kb on - strand, within Dshi_0647 at 648.230 kb on + strand, within Dshi_0647 at 648.230 kb on + strand, within Dshi_0647 at 648.287 kb on - strand, within Dshi_0647 at 648.354 kb on - strand, within Dshi_0647 at 648.356 kb on + strand, within Dshi_0647 at 648.398 kb on + strand, within Dshi_0647 at 648.461 kb on + strand, within Dshi_0647 at 648.540 kb on + strand, within Dshi_0647
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 644,552 + Dshi_0645 0.14 +2.3 644,563 + Dshi_0645 0.16 +0.5 644,563 + Dshi_0645 0.16 +0.4 644,571 - Dshi_0645 0.16 -1.4 644,654 + Dshi_0645 0.25 -1.4 644,654 + Dshi_0645 0.25 -2.7 644,856 + Dshi_0645 0.45 -0.3 644,964 - Dshi_0645 0.55 +0.8 645,068 + Dshi_0645 0.66 +0.9 645,106 - Dshi_0645 0.69 -0.3 645,170 + Dshi_0645 0.76 +3.8 645,208 + Dshi_0645 0.80 -0.7 645,406 - +1.5 645,406 - +1.6 645,657 - +0.5 645,662 - -1.4 645,708 - Dshi_0646 0.11 -3.5 645,844 - Dshi_0646 0.18 +1.3 645,878 - Dshi_0646 0.19 +0.3 645,909 + Dshi_0646 0.21 +0.9 645,911 - Dshi_0646 0.21 -0.1 646,026 - Dshi_0646 0.26 -1.4 646,154 + Dshi_0646 0.32 -0.7 646,185 + Dshi_0646 0.34 -0.2 646,185 + Dshi_0646 0.34 -3.0 646,476 - Dshi_0646 0.48 -0.8 646,507 + Dshi_0646 0.49 +0.7 646,558 + Dshi_0646 0.52 +2.1 646,709 + Dshi_0646 0.59 -2.1 646,751 + Dshi_0646 0.61 -0.1 646,784 + Dshi_0646 0.62 -1.9 646,835 - Dshi_0646 0.65 +1.9 646,848 - Dshi_0646 0.65 +0.5 646,925 - Dshi_0646 0.69 +2.7 646,925 - Dshi_0646 0.69 -1.7 647,343 - Dshi_0646 0.89 -3.2 647,395 + -2.2 647,485 + -3.2 647,581 + +0.9 647,615 - +0.2 647,644 + -0.1 647,682 + +0.7 647,690 - +0.9 647,817 + +2.3 647,825 - -0.2 647,871 - +0.9 647,871 - -0.7 648,083 - Dshi_0647 0.12 -1.1 648,219 + Dshi_0647 0.16 -1.8 648,220 - Dshi_0647 0.17 +0.9 648,230 + Dshi_0647 0.17 -1.7 648,230 + Dshi_0647 0.17 -2.9 648,287 - Dshi_0647 0.19 +1.7 648,354 - Dshi_0647 0.21 -0.4 648,356 + Dshi_0647 0.21 +0.9 648,398 + Dshi_0647 0.23 -0.1 648,461 + Dshi_0647 0.25 -0.6 648,540 + Dshi_0647 0.28 -0.1
Or see this region's nucleotide sequence