Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0639 and Dshi_0640 are separated by 101 nucleotides Dshi_0640 and Dshi_0641 are separated by 4 nucleotides Dshi_0641 and Dshi_0642 are separated by 2 nucleotides Dshi_0642 and Dshi_0643 are separated by 10 nucleotides
Dshi_0639: Dshi_0639 - ABC-2 type transporter (RefSeq), at 638,539 to 639,300
_0639
Dshi_0640: Dshi_0640 - peptidase S49 (RefSeq), at 639,402 to 640,199
_0640
Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374
_0641
Dshi_0642: Dshi_0642 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 640,377 to 641,315
_0642
Dshi_0643: Dshi_0643 - short-chain dehydrogenase/reductase SDR (RefSeq), at 641,326 to 642,117
_0643
Position (kb) 640
641 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 639.208 kb on + strand, within Dshi_0639 at 639.233 kb on + strand at 639.256 kb on - strand at 639.302 kb on - strand at 639.309 kb on + strand at 639.838 kb on + strand, within Dshi_0640 at 639.887 kb on + strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.989 kb on + strand, within Dshi_0640 at 639.997 kb on - strand, within Dshi_0640 at 639.999 kb on + strand, within Dshi_0640 at 640.009 kb on + strand, within Dshi_0640 at 640.093 kb on + strand, within Dshi_0640 at 640.185 kb on + strand at 640.275 kb on + strand, within Dshi_0641 at 640.377 kb on - strand at 640.524 kb on - strand, within Dshi_0642 at 641.098 kb on + strand, within Dshi_0642
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 639,208 + Dshi_0639 0.88 -0.9 639,233 + +0.9 639,256 - +0.9 639,302 - +0.5 639,309 + -1.2 639,838 + Dshi_0640 0.55 -1.9 639,887 + Dshi_0640 0.61 -1.9 639,895 - Dshi_0640 0.62 -2.9 639,895 - Dshi_0640 0.62 -2.3 639,895 - Dshi_0640 0.62 -1.7 639,974 + Dshi_0640 0.72 -1.1 639,974 + Dshi_0640 0.72 -1.7 639,974 + Dshi_0640 0.72 -0.1 639,982 - Dshi_0640 0.73 +0.9 639,982 - Dshi_0640 0.73 -1.9 639,989 + Dshi_0640 0.74 -0.1 639,997 - Dshi_0640 0.75 -0.3 639,999 + Dshi_0640 0.75 -0.1 640,009 + Dshi_0640 0.76 -3.4 640,093 + Dshi_0640 0.87 +2.7 640,185 + -4.3 640,275 + Dshi_0641 0.42 +0.9 640,377 - +0.9 640,524 - Dshi_0642 0.16 -1.4 641,098 + Dshi_0642 0.77 +2.5
Or see this region's nucleotide sequence